Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0573 ATGGGAGTCCCAGCGTTCTATAGATGGCTGGCGGAGAAATATCCGTTAGTGGTTGTTGACGCCATCGAAGAGGAACCTGTCGTCATCGACGGCGTTCAAATCCCGGTGGATACGAGTAAGAAGAACCCTAACAACGTCGAATACGATAACCTCTACCTCGACATGAACGGCATCATTCACCCTTGTTTCCACCCTGAGGATAGGCCATCGCCGACCTCTTTCGATGAGGTGTTTGAGTGCATGTTTGACTACATTGACAGGCTATTCGTCATGGTGCGGCCTCGGAAGTTGCTCTACATGGCTATTGATTGGATTCATCTTGTAGATGGTGTTGCACCGAGGGCTAAAATGAACCAACAACGGTCTCGGCGGTTTAGGGCGGCCAAAGACGCTGCTGTTGCGGCTGCTGAAGAAGCAAGGTTAAGGGAGGAATTTGAGAGAGAGGGCAGAAAGCTTCCTCCTAAAGATGAGTCGCAGGTTTTTGATTCAAATGTCATTACACCTGGGACTGAATTTATGGCTGTTTTGTCAATTGCACTTCAGTACTATATTCATCTTAGGTTGAACAATGACCCTGGTTGGCAAAACATTAAGGTTATTCTTTCTGATGCAAATGTTCCTGGCGAAGGGGAGCATAAGATTATGTCCTATATTCGCCTACAGAGAAATCTGAAAGGTTTTGATCCAAATACACGGCATTGCCTATATGGTTTGGATGCTGATTTGATTATGTTGGCATTGGCTACCCATGAAATCCATTTTTCAATTCTTAGAGAGATTGTATTCACTCCTGGACAAGACAAATGCTTCCTCTGTGGTCAGATGGGTCATGTTGCTGCAGACTGTGAAGGAAAGGCAAAAAGGAAGGCAGGAGAGTTTGATGAAAAAGGAGGGGCAAATGTAGCTAAAAAGCCCTACCAGTTCCTGAACATTTGGACTCTGAGGGAATATCTGGAGTATGAGATGAGAATACCAAATTCTGCTTTTGATATTGATTTTGAATGCATTTTGGATGATTTTATCTTCATGTGTTTTTTTGTGGGCAATGATTTCCTGCCACATATGCCTACGCTAGAGATTCGTGAGGGTGCAATTAACTTGCTTTTGGCAGTATACAAAAAGGAATTTAGGAATTTGGGTGGTTATTTAACAAATGGAAGCCAGCCAAATTTGAGCAGGGTGGAGCACTTTATTCAGGCTGTTGGATCCTATGAGGATAAAATATTCCAGAAAAGAGCTCGATTGCATCAGAGACAAGCAGAAAGAATAAAGCGCGAGAAGGCACAAGCAAGAAGAGGAGATGATGCTGAACCTCAAGCTCAACCGGAGTCTCTAGTTCCAGTTTCACGATTCCATGGTTCTCGTCTTGCTTCAGCTCCTACTCCTTCACCATTTCAACAACCTGGGAATTATCACTCTCACGTGTCCTCAACAATTAGAAAAGACAATAAAGAAGCCCTTGAGAGGCCTCATAAAATCTCTAAGTTATCTTCAGGAGCAACTGTTGCTGCTGCTATTGTTGAAGCTGAGAATAGTCTTGAAATAGAAGTTCAAGATAATAAAGATGAATTAAAAACAAAGCTAAAGGAGATACTTCGTGAGAAATCTGATGTATTCAACTCAAAAAATGCTGAAGAGGACAAGATTAAGTTGGGAGAACCTGGCTGGAAAGAGAGGTATTATGAGGAAAAATTTTCTGCTAAAACTCCTGAGGAACTTGAAATGATACGGAAAGATGTTGTCTTGAAATACACTGAAGGCCTATGTTGGGTGATGCACTATTATTATGAAGGGGTTTGTTCTTGGCAATGGTTTTATCCTTATCATTATGCACCCTTTGCATCTGATCTGAAGGGCCTTGGTGAGCTAAATATTAGCTTTATGCTGGGTACCCCATTCAAACCATTTGACCAGCTTCTAGGGGTTTTTCCTGCTGCAAGTGCTCATGCACTTCCTGAGCCATACAGGAAACTTATGACAGATCCAACCTCACCAATCATTGATTTTTATCCAATCGACTTTGAAGTGGACATGAATGGCAAACGCTATGCCTGGCAGGGTATTGCAAAGTTGCCTTTTATTGATGAAGTTCGTCTTCTTGCAGAAGTTCAAAAAATTGAAAACTTATTAACAGCAGAGGAAACGCGGCGGAATGCTATAATGTTTGACTTGCTTTTTGTGAATTCCTGTCATCCTCTCTCTGCGTGCATAAGTACACTTGACAACAAGTGTAAAAACATGCCAAACAGTGAACGGGCCAAGGTCAAGGAAAAAATCAATCCCAAAGAAAGTGGTGGAATGAATGGTTACATATCTTTGTGTGGTGGAGAACCTTGCCCTCCTATCTTCAGGTCTCCGGTTGCAAGCATGGAAGATATCATGGACAACCATGTGATATGTGCAATTTATAGACTTCCAGATGCGCATAAACACATTACCCAACCGCCACATGGAGTTAAATATCCTAAAAAGACTGTGACAATTGGGGATCTAAAACCTGAACCTGTTTTATGGCATGAAGATTCGGGTAGGAGACATGCAGAAAATGGGAGGAAAAACCCTCCAGGATCTGTTTCGGGTCGGGAGCTTGGAGAGGCAGCACATAGACTCGTTGTCAATTCCTTACAGGCAAAGGTTGACCCTAATAGATTCCGCCATTCACATAATGGACCCCCGGGATCTTATCCTGCACCAGTGGGTCATCGACAACCATTGCCTTCCTATAACTATGAATCACGTCCAGGATACGTTGCAATGCCACCTCCTATGTCAGCTCCATCACTCCAAGGCCGACAACAGTTTGCACCTTACAGTGCTGTCCCTACTGCTCAGCAGTATGGTTATAATCAAACATACCCACCACAAATGATGTACAATCCTAATCAGCAATCAAATTTTTATGAAAGAAATGACTATCAACATCCTAGACCACATCATTATGAAAGGAATAACAATCGTGATGGGGGAAACGCAAGGCATGGATATCAATCATCAGGAAATAATCAGAATGCCAGGTTTATGAATACGCAAGGTGCATTTGCCAGTCACCATCACCAAGTTGGTAACCACAGCCAAAATTTTCAACCATCCAGCGATTACCAGAATTGGACTCCACGGAACAACTCGAGTGAGCACAGGGAATATGGTCAACATTCGGCCAATCAATATTCTGTATTAGATAGAAGAGGAAACAGGAAACCAATGCCACCATCTGGTTACAGTCGCAAATAA 3231 0.4277 MGVPAFYRWLAEKYPLVVVDAIEEEPVVIDGVQIPVDTSKKNPNNVEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFECMFDYIDRLFVMVRPRKLLYMAIDWIHLVDGVAPRAKMNQQRSRRFRAAKDAAVAAAEEARLREEFEREGRKLPPKDESQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLKGFDPNTRHCLYGLDADLIMLALATHEIHFSILREIVFTPGQDKCFLCGQMGHVAADCEGKAKRKAGEFDEKGGANVAKKPYQFLNIWTLREYLEYEMRIPNSAFDIDFECILDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFRNLGGYLTNGSQPNLSRVEHFIQAVGSYEDKIFQKRARLHQRQAERIKREKAQARRGDDAEPQAQPESLVPVSRFHGSRLASAPTPSPFQQPGNYHSHVSSTIRKDNKEALERPHKISKLSSGATVAAAIVEAENSLEIEVQDNKDELKTKLKEILREKSDVFNSKNAEEDKIKLGEPGWKERYYEEKFSAKTPEELEMIRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKGLGELNISFMLGTPFKPFDQLLGVFPAASAHALPEPYRKLMTDPTSPIIDFYPIDFEVDMNGKRYAWQGIAKLPFIDEVRLLAEVQKIENLLTAEETRRNAIMFDLLFVNSCHPLSACISTLDNKCKNMPNSERAKVKEKINPKESGGMNGYISLCGGEPCPPIFRSPVASMEDIMDNHVICAIYRLPDAHKHITQPPHGVKYPKKTVTIGDLKPEPVLWHEDSGRRHAENGRKNPPGSVSGRELGEAAHRLVVNSLQAKVDPNRFRHSHNGPPGSYPAPVGHRQPLPSYNYESRPGYVAMPPPMSAPSLQGRQQFAPYSAVPTAQQYGYNQTYPPQMMYNPNQQSNFYERNDYQHPRPHHYERNNNRDGGNARHGYQSSGNNQNARFMNTQGAFASHHHQVGNHSQNFQPSSDYQNWTPRNNSSEHREYGQHSANQYSVLDRRGNRKPMPPSGYSRK* 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0573 1076 MobiDBLite consensus disorder prediction 419 480 - -
Apr9g0573 1076 Pfam Zinc knuckle 268 282 IPR001878 GO:0003676|GO:0008270
Apr9g0573 1076 PANTHER 5'->3' EXORIBONUCLEASE 1 1043 IPR027073 -
Apr9g0573 1076 MobiDBLite consensus disorder prediction 971 988 - -
Apr9g0573 1076 MobiDBLite consensus disorder prediction 419 438 - -
Apr9g0573 1076 MobiDBLite consensus disorder prediction 459 476 - -
Apr9g0573 1076 Pfam Xrn1 helical domain 331 830 IPR041412 -
Apr9g0573 1076 MobiDBLite consensus disorder prediction 951 970 - -
Apr9g0573 1076 PIRSF Exonuclease_Xrn2 1 1066 IPR017151 GO:0004534|GO:0005634|GO:0006139
Apr9g0573 1076 SMART c2hcfinal6 268 284 IPR001878 GO:0003676|GO:0008270
Apr9g0573 1076 Gene3D - 623 720 - -
Apr9g0573 1076 Coils Coil 413 433 - -
Apr9g0573 1076 MobiDBLite consensus disorder prediction 951 1004 - -
Apr9g0573 1076 MobiDBLite consensus disorder prediction 841 861 - -
Apr9g0573 1076 MobiDBLite consensus disorder prediction 989 1004 - -
Apr9g0573 1076 Pfam XRN 5'-3' exonuclease N-terminus 1 259 IPR004859 GO:0003676|GO:0004527
Apr9g0573 1076 Coils Coil 514 534 - -
Apr9g0573 1076 CDD PIN_XRN1-2-like 51 318 - -
Apr9g0573 1076 SUPERFAMILY Retrovirus zinc finger-like domains 264 289 IPR036875 GO:0003676|GO:0008270
Apr9g0573 1076 MobiDBLite consensus disorder prediction 1016 1059 - -
Apr9g0573 1076 ProSiteProfiles Zinc finger CCHC-type profile. 268 282 IPR001878 GO:0003676|GO:0008270
Apr9g0573 1076 MobiDBLite consensus disorder prediction 1016 1076 - -
Apr9g0573 1076 Gene3D - 158 375 - -
Apr9g0573 1076 Gene3D - 1 141 - -
Apr9g0573 1076 PANTHER 5'-3' EXORIBONUCLEASE 1 1043 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0573 Apr-Chr9 8240991 8259306 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0573 9 8240991 8259306 Apr9g0573 9 8240991 8259306 ECH