Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0564 ATGGACGTGGATAATCCAGAGGATGGATTGAAGAAGCTTGAATACTTGTCGCTGGTGTCGAAGGTTTGCACCGAGTTGGAGTCCCACACTGGCACCGGCGACAAGGTTCTCGCCGAGTTCATTACTGAGTTAGGTCGAACCTCCGAGAACGTCGAAGAATTCGACGCCAAACTGAAGGAGAATGGTGGAGAGATGCCTGATTACTTCGTTCGAACGCTTCTCAAAATAATACACGCCATTCTTCCTCCGAAGCCCAAGGATTCGAAGAAGGAGAAAGAGAGCGCCAACACCAATTCCAAGACCAAGTTCAAGGCTCTTGCTATCGCAGACGATAGGGACCGTGTGAAGGAGCTTCAGAAGGAAATTGAATCCGAGATCAGAGAGAAGCAGAAACAACCAACAGATGAAGAAGATGGGTACAGAGACAGAGATAGAAGAGATAAGCGCAGAGACAGGTATGAAAGAGATAGAGATGATGATGACGATGATAGAAGGGATTATAGCAGAAGAGGAAGGGATAGGGATAGGGATAGAGATAGAGATAGATATGATAGGGATAGGGATAGGGATAGGGATAGATATGAGAGGCGTAGAAGGGATGGGTATGGAGAGAATGAACGTGGGAGGGAGAATGGTGATGGTAATAGGAAGGGTCGAAGGGATACGCTGCATGGGTCTAGCGAACCTGAGTTATATATGGTTTATAAAGGGAGAGTGTCGAGGGTTATGGATACTGGATGCTTTGTTCAGTTGGATGATTTTAGAGGGAAGGAGGGTTTGGTGCATGTTTCACAGATTGCCACGCGAAGGATTAGTAATGCTAAGGATGTTGTCAAGCGGGATCAGGAGGTTTATGTGAAGGTGATTTCAGTTTCTGGTCAGAAGTTGAGTCTTTCAATGAGGGATGTTGATCAGCATACTGGAAAGGATCTTCTTCCGTTGAAGAAGAACACCGAGGATGAAGCTTTGAGGATGAACCCACCGAAGGATGGGCCGGTTGCCAGGACAGGTCTTTCGGGTATTAGGATTGTGGAGGAGGATGATATTGGTTCTTCGCGGAGACCTCTGAAGAGAATGAGCTCACCGGAGAAATGGGAAGCAAAACAATTGATTGCTTCGGGTGTTTTGGGTGTTTCGGAGTATCCAACTTATGATGAGGAGGGAGATGGATTGCTATACCAAGAGGAAGGTGGTGAGGAAGAGCTTGAGATTGAGATGAATGAGGATGAACCTGCCTTCTTGCAAGGGCAGAGCAGATACTCCATGGATATGTCTCCTGTTAAGATTTTTAAGAATCCAGAAGGTTCTCTAGGTCGTGCTGCTGCTCTCCAGTCTGCACTCATAAAGGAGCGTAGGGAAGTAAGAGAACAACAACAACGTACAATGCTTGATTCAATTCCAAAGGATCTTAATCGTCCTTGGGAAGATCCTATGCCTGAGACAGGTGAAAGGCATCTTGCCCAGGAGCTTAGAGGTGTTGGCTTATCAGCCTATGATATGCCGGAATGGAAGAAGGATGCCTATGGGAAGACCATTACTTTTGGGCAACGATCAAAGCTTTCTATTCAGGAGCAGAGGCAGAGTTTGCCAATTTATAAGTTAAAGAAAGAATTGATTCAGGCTGTGCATGATAATCAGGTGTTGGTGGTTATTGGTGAAACCGGTTCTGGCAAGACTACTCAGGTCACACAGTATCTTGCTGAAGCGGGTTACACCACAAAAGGTAAAATTGGATGTACTCAACCTCGTAGGGTGGCTGCAATGTCAGTGGCAAAGAGAGTTGCAGAAGAGTTTGGTTGTCGATTGGGAGAGGAAGTTGGTTATGCCATTCGGTTTGAGGATTGCACTGGACCAGATACTGTAATCAAGTACATGACAGATGGTATGCTTCTTAGGGAAATATTGGTTGATGAGAATCTGTCACAGTATTCTGTTATAATGCTTGACGAAGCCCACGAAAGAACTATTCATACTGATGTGCTTTTTGGACTGCTGAAGCAACTAGTGAAGCGTAGGCCTGAATTGCGATTGATTGTCACATCTGCTACCCTGGATGCTGAGAAATTTTCAGGCTATTTCTTTAACTGTAACATCTTTACAATTCCTGGTAGAACATTTCCTGTGGAGATACTCTATACTAAACAACCCGAAAGTGATTACTTAGATGCAGCTTTAATCACTGTCCTACAGATCCACTTGACGGAACCTGAAGGAGACATTCTCCTCTTCTTGACTGGTCAAGAAGAGATTGATTTTGCCTGCCAATCTCTCTATGAGAGAATGAAGGGATTGGGTAAGAATGTTCCGGAGCTGATCATTTTACCGGTGTATAGTGCCCTTCCTAGTGAAATGCAGTCTAGGATATTTGAACCTGCTCCTCCTGGGAAAAGGAAAGTGGTTGTGGCTACTAACATTGCTGAGGCTTCTTTGACTATTGATGGGATATTTTATGTAATTGATCCTGGATTTGCTAAGCAAAATGTTTATAACCCAAAGCAAGGTCTAGATTCTTTGGTGATAACTCCAATTTCACAAGCATCAGCCAAGCAAAGAGCTGGACGTGCAGGGCGTACTGGACCTGGGAAGTGTTATCGCCTGTATACTGAGAGTGCATATAGGAATGAGATGTCTCCTACTACAATTCCAGAAATTCAAAGGATAAATCTGGGGACGACTACTCTTAATATGAAAGCTATGGGGATAAATGATCTACTGTCCTTTGACTTTATGGATCCACCATCACCTCAAGCACTTATTTCTGCCATGGAGCAGCTATACAGTCTTGGAGCATTGGATGAAGAAGGCCTTTTAACCAAACTGGGGAGGAAAATGGCAGAATTTCCTTTGGATCCACCATTGTCCAAGATGCTGCTTGCCAGTGTGGACCTTGGATGCAGTGATGAGATTTTGACCATAATTGCCATGATCCAGACAGGCAATATTTTTTACCGGCCTAGGGAAAAACAAGCCCAAGCAGATCAGAAGAGGGCAAAGTTTTTCCAGCCAGAGGGTGACCATCTTACACTTCTTGCTGTTTATGAGGCTTGGAAAGCTAAGAATTTTTCTGGGCCCTGGTGTTTCGAGAACTTTGTTCAGTCCCGATCATTGAGAAGAGCACAGGATGTCAGGAAACAGCTTCTCACCATCATGGATAAGTACAAATTGGATGTCGTTAGTGCTGGAAAAAACTTCACCAAAATCAGGAAGGCTATCACCGCAGGATTCTTTTTCCATGCTGCTAGGAAGGACCCTCAGGAAGGTTACAGAACCCTAGTTGAGAACCAGCCTGTTTACATCCATCCAAGTTCAGCTTTGTTCCAGAGACAGCCGGACTGGGTCATCTACCATGAGCTTGTGATGACAACTAAGGAATATATGCGTGAGGTCACTGTCATAGATCCCAAATGGCTTGTTGAATTGGCTCCAAGATTCTTCAAAGTGGCAGATCCTACAAAGATGAGCAAACGAAAGCGTCAAGAGCGTATAGAACCACTTTATGATAGATACCACGAACCAAATTCATGGCGTTTGAGTAAACGCCGTGCATGA 3549 0.4469 MDVDNPEDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGRTSENVEEFDAKLKENGGEMPDYFVRTLLKIIHAILPPKPKDSKKEKESANTNSKTKFKALAIADDRDRVKELQKEIESEIREKQKQPTDEEDGYRDRDRRDKRRDRYERDRDDDDDDRRDYSRRGRDRDRDRDRDRYDRDRDRDRDRYERRRRDGYGENERGRENGDGNRKGRRDTLHGSSEPELYMVYKGRVSRVMDTGCFVQLDDFRGKEGLVHVSQIATRRISNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQHTGKDLLPLKKNTEDEALRMNPPKDGPVARTGLSGIRIVEEDDIGSSRRPLKRMSSPEKWEAKQLIASGVLGVSEYPTYDEEGDGLLYQEEGGEEELEIEMNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGTTTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA* 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0564 1182 CDD SF2_C_RHA 706 867 - -
Apr9g0564 1182 CDD S1_DHX8_helicase 232 308 - -
Apr9g0564 1182 MobiDBLite consensus disorder prediction 123 225 - -
Apr9g0564 1182 ProSiteProfiles S1 domain profile. 232 301 IPR003029 GO:0003676
Apr9g0564 1182 Gene3D - 227 312 IPR012340 -
Apr9g0564 1182 Pfam Helicase associated domain (HA2) 921 1009 IPR007502 GO:0004386
Apr9g0564 1182 Gene3D - 501 704 IPR027417 -
Apr9g0564 1182 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 539 702 IPR014001 -
Apr9g0564 1182 CDD DEXHc_DHX8 524 702 IPR044762 GO:0000398|GO:0003724|GO:0005524
Apr9g0564 1182 SMART ha2_5 920 1010 IPR007502 GO:0004386
Apr9g0564 1182 Coils Coil 108 132 - -
Apr9g0564 1182 Gene3D - 904 1003 - -
Apr9g0564 1182 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 644 653 IPR002464 -
Apr9g0564 1182 PANTHER ATP-DEPENDENT RNA HELICASE 85 1182 - -
Apr9g0564 1182 SUPERFAMILY Nucleic acid-binding proteins 229 304 IPR012340 -
Apr9g0564 1182 SMART S1_6 230 301 IPR022967 -
Apr9g0564 1182 MobiDBLite consensus disorder prediction 84 108 - -
Apr9g0564 1182 PANTHER - 85 1182 - -
Apr9g0564 1182 Pfam Helicase conserved C-terminal domain 727 859 IPR001650 -
Apr9g0564 1182 MobiDBLite consensus disorder prediction 84 98 - -
Apr9g0564 1182 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1067 1142 IPR011709 -
Apr9g0564 1182 Pfam DEAD/DEAH box helicase 535 685 IPR011545 GO:0003676|GO:0005524
Apr9g0564 1182 Pfam S1 RNA binding domain 233 299 IPR003029 GO:0003676
Apr9g0564 1182 SMART ultradead3 527 711 IPR014001 -
Apr9g0564 1182 SMART helicmild6 755 859 IPR001650 -
Apr9g0564 1182 Coils Coil 440 460 - -
Apr9g0564 1182 Gene3D - 705 879 IPR027417 -
Apr9g0564 1182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 519 1052 IPR027417 -
Apr9g0564 1182 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 720 900 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0564 Apr-Chr9 7983914 7989982 Dispersed/Transposed