Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0542 ATGAACGGTGCATGCCTCTACGGTTCGGTGATTACCCCATCATCCCCCTCTCCGGTACTTCAACAACGCTATCATTATCTCCATCCACCAATCCCCATTCGCCCCTTATTCCTATCCCCTCTCACCACCGCAACCCTCACCACCTTCGTTCTACAACGCGACGCTGCAGTTGAAGTCACGTTCCCTCCTCACTCCGACGACGCCGTTTCATCGCAAAACGACACCCCCGCGGTTCAGTTCGAAACTCCGACAGAACAACACAACCAAGATGCAGCTTCGCCACTTCTTTCACAAGAGAAAGGAACGAAACTTAGAAAGAAGAAAGAAGAAGACAACGTCGTCTTCGATAACCGCTACAAGCTTCGCAACGGAAGAGAGGTTTTTGAAGAAAAAGCCTACCTCGTAGGCGTTGAGCGAAAAAGCGATGTTCAGGATTTTGGTATAGAAGAGTCTCTTAGCGAATTGGCACAATTAGCTGACACTGCTGGATTATTGGTTGTTGGGTCTACATACCAGAAGCTTACTTCCCCAAACCCTAGGACGTACATTGGCTCTGGCAAGGTTTCTGAAATCAAGAGTGCAATTCATGCACTGGGTGTTGAAACTGTTATCTTTGATGATGAGCTGTCGGCTGGGCAATTGCGCAACTTGGAAAAGAGTTTTGGTGGAGATGTGAGAGTTTGCGATCGAACTGCCCTCATCCTTGATATATTTAATCAGCGAGCGGCTACACATGAAGCATCTTTACAGGTTTCATTAGCGCAAATGGAATACCAACTACCTCGTCTAACAAAAATGTGGACTCATCTTGAACGTCAAGCAGGAGGAAAGGTGAAGGGAATGGGTGAAAAACAAATAGAAGTGGACAAGCGTATTTTGCGTAACCAAATTGGTATTCTCAAAAAAGAGCTAGAATCAGTTAGGAAACACCGAAAGCAGTACCGTAACAGGCGTTTCTCAGTACCTGTGCCAGTGGTATCCTTGGTTGGTTACACAAATGCTGGTAAGAGTACACTTTTGAATCGACTAACTGGAGCAGATGTTCTTGCTGAGGATAAATTATTTGCAACTTTAGATCCAACTACAAGGAGGGTACAGATGAAGAATGGAAAGGAGTTTCTCCTAACAGACACTGTTGGTTTTATTCAGAAGTTACCTACTACACTAGTTGCTGCCTTCAGAGCTACGCTGGAGGAGATATCAGAGTCTTCACTCTTGGTGCATCTGGTTGATATCAGTCACCCCTTGGCTGAGCAACAGATAAATGCTGTGGACAAAGTTCTGTCAGAACTAGATGTATCATCAATTCCAAGATTGATGGTCTGGAACAAGGTTGACAAAGCTAGCGATCCCCGGAAAATCAGGCTAGAAGCTGAGAAAAGAGAAGATGTTGTATGCATATCTGCTTTAAGTGGTGAGGGCTTAACAGAATTTTGTAATGCAGTTCAAGACAAGCTAAAGGACTCCATGGTTTGGGTAGAAGCTTTGGTCCCATTTGAAAATGGGGACCTTCTCAGCACCATACACCAGGTTGGAATGATTGAGAAAACTGAATATACAGAGCAAGGGACATATATCAAGGCACATGTGCCCCTGCGTTTTGCAAGAATGCTTACACCCATGAGGCAACTGTGTGTTTCGCGATCTTAA 1650 0.4503 MNGACLYGSVITPSSPSPVLQQRYHYLHPPIPIRPLFLSPLTTATLTTFVLQRDAAVEVTFPPHSDDAVSSQNDTPAVQFETPTEQHNQDAASPLLSQEKGTKLRKKKEEDNVVFDNRYKLRNGREVFEEKAYLVGVERKSDVQDFGIEESLSELAQLADTAGLLVVGSTYQKLTSPNPRTYIGSGKVSEIKSAIHALGVETVIFDDELSAGQLRNLEKSFGGDVRVCDRTALILDIFNQRAATHEASLQVSLAQMEYQLPRLTKMWTHLERQAGGKVKGMGEKQIEVDKRILRNQIGILKKELESVRKHRKQYRNRRFSVPVPVVSLVGYTNAGKSTLLNRLTGADVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHLVDISHPLAEQQINAVDKVLSELDVSSIPRLMVWNKVDKASDPRKIRLEAEKREDVVCISALSGEGLTEFCNAVQDKLKDSMVWVEALVPFENGDLLSTIHQVGMIEKTEYTEQGTYIKAHVPLRFARMLTPMRQLCVSRS* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0542 549 Gene3D - 323 491 IPR027417 -
Apr9g0542 549 PANTHER GTP-BINDING PROTEIN 6-RELATED 99 534 - -
Apr9g0542 549 Pfam HflX C-terminal domain 456 524 IPR045498 -
Apr9g0542 549 TIGRFAM small_GTP: small GTP-binding protein domain 325 480 IPR005225 GO:0005525
Apr9g0542 549 MobiDBLite consensus disorder prediction 62 107 - -
Apr9g0542 549 Hamap GTPase HflX [hflX]. 152 515 IPR016496 GO:0005525
Apr9g0542 549 CDD HflX 283 486 IPR030394 GO:0005525
Apr9g0542 549 Gene3D - 141 241 IPR042108 -
Apr9g0542 549 PANTHER GTP-BINDING PROTEIN HFLX 99 534 IPR016496 GO:0005525
Apr9g0542 549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 324 496 IPR027417 -
Apr9g0542 549 Pfam GTP-binding GTPase N-terminal 149 238 IPR025121 -
Apr9g0542 549 Gene3D - 242 309 - -
Apr9g0542 549 Coils Coil 297 317 - -
Apr9g0542 549 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 324 490 IPR030394 GO:0005525
Apr9g0542 549 Pfam GTP-binding GTPase Middle Region 241 318 IPR032305 -
Apr9g0542 549 Pfam 50S ribosome-binding GTPase 326 444 IPR006073 GO:0005525
Apr9g0542 549 MobiDBLite consensus disorder prediction 65 96 - -
Apr9g0542 549 TIGRFAM GTP_HflX: GTP-binding protein HflX 131 485 IPR016496 GO:0005525
Apr9g0542 549 PRINTS GTP1/OBG GTP-binding protein family signature 326 346 IPR006073 GO:0005525
Apr9g0542 549 PRINTS GTP1/OBG GTP-binding protein family signature 393 411 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0542 Apr-Chr9 7577537 7590609 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0542 9 7577537 7590609 Apr9g0542 9 7577537 7590609 ECH