Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0519 ATGCCATTCAGGAGTATTGTGCATGATCTCAAGGAGATTGGAGAGGGTATTGCCAACATGTATAGAAGAGGGACAGAAGCCAAGCATGTGCATCGCCATGGAAAATCTCACATTGCACCAGAATGTTCCTCACCATCACCATCACCATCACCATCACCATCACCATCTCAGAGCCAGTGGGCCAACTTACCACCTGAGTTGCTGTTAGACATAATTCAAAGGTTGGAAGCAAGTGAAACTTCATGGCCTGCACGAAGAGCACTTGTAGCATGTGCCTCAGTTTGTAGGTTGTGGAGAGAGATAACAAAGGATGTGGTTAAGACACCAGAACAGTGTGGTTGGCTCACTTTTCCTATATCACTAAAGCAGCCTGGTCCGAGAGACTCTCCAATCCAGTGTTTTATTAAGAGAGAGAGGGTGACTTCAACATATTGTTTATATCTCGGTCTGAGCCCTGCTCTTTCTGGTGATATGAGCAAACTGTTACTGGCAGCAAAGAAGATTAGAAGGGCAACGTGTACAGAATTTTTAATATCATTGGTTGCTGATGATTTCTCTCGGACTAGCAACACTTACATTGGAAAACTGAGGTCTAATTTTCTGGGCACCAAGTTTACAATCTTGGATGGGGAGCCCCCACATGATTCTTCACTCCCATTGAATTGCAAGTTGCAACAAAGAGTCCACCTGAAGCAGGTACTTCCAAAGGTTGCTGCTGCTAACTATAAAGTGGCCACAGTATCTTATGAACTTAATGTTCTCAGAACAAGAGGTCCAAGGAGAATGAGATGTACAATGCACTTAATCCCAATATCGGCAATTCAAGAAGGAGGAACTGCCCCTACTCCTTTGAAGTTTACCAATTGTGTTAATGACCGGGCATCTTCCAACCTTATTTCAAAAGGAAAGAAATCAGAAGTTGACTTTGACTCAACTAGCACTGGCAATACTCTAGAGTCAGCCCAGAGTGCAAGGGAACCATTGATTTTGAAAAACAAAGCTCCTAGATGGCATGAACAATTGCAATGTTGGTGCTTGAATTTCAAGGGAAGAGTTACTGTGGCCTCAGTGAAGAACTTCCAACTAGTAGCAGCTGCAGAACCATGCCAAAATGTTTCAGCGGCAGAACAAGAGAAAGTCATACTACAATTTGGAAAGATTGGGAAGGACATATTCACCATGGATTACCGATATCCCCTCTCAGCTTTCCAAGCCTTTGCAATATGCTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1263 0.4347 MPFRSIVHDLKEIGEGIANMYRRGTEAKHVHRHGKSHIAPECSSPSPSPSPSPSPSQSQWANLPPELLLDIIQRLEASETSWPARRALVACASVCRLWREITKDVVKTPEQCGWLTFPISLKQPGPRDSPIQCFIKRERVTSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVADDFSRTSNTYIGKLRSNFLGTKFTILDGEPPHDSSLPLNCKLQQRVHLKQVLPKVAAANYKVATVSYELNVLRTRGPRRMRCTMHLIPISAIQEGGTAPTPLKFTNCVNDRASSNLISKGKKSEVDFDSTSTGNTLESAQSAREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0519 420 PRINTS Tubby superfamily signature 176 192 IPR000007 -
Apr9g0519 420 PRINTS Tubby superfamily signature 192 216 IPR000007 -
Apr9g0519 420 PRINTS Tubby superfamily signature 241 268 IPR000007 -
Apr9g0519 420 PRINTS Tubby superfamily signature 330 347 IPR000007 -
Apr9g0519 420 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Apr9g0519 420 PRINTS Tubby superfamily signature 377 396 IPR000007 -
Apr9g0519 420 PRINTS Tubby superfamily signature 398 420 IPR000007 -
Apr9g0519 420 PANTHER TUBBY-RELATED 1 420 - -
Apr9g0519 420 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 420 - -
Apr9g0519 420 Gene3D - 54 106 - -
Apr9g0519 420 Pfam Tub family 121 415 IPR000007 -
Apr9g0519 420 Gene3D Tubby Protein; Chain A 118 420 IPR025659 -
Apr9g0519 420 ProSitePatterns Tub family signature 1. 348 361 IPR018066 -
Apr9g0519 420 MobiDBLite consensus disorder prediction 26 60 - -
Apr9g0519 420 ProSitePatterns Tub family signature 2. 405 420 IPR018066 -
Apr9g0519 420 Pfam F-box domain 60 107 IPR001810 GO:0005515
Apr9g0519 420 SUPERFAMILY F-box domain 48 104 IPR036047 GO:0005515
Apr9g0519 420 SUPERFAMILY Tubby C-terminal domain-like 109 420 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0519 Apr-Chr9 7277851 7281364 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Apr9g0519 Tub 9.7e-106 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0519 9 7277851 7281364 Apr9g0519 9 7277851 7281364 ECH