Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0476 ATGGGTTGGTTAAGCAGAATTTTTAAAGGCTCTGACCATAAGATTTCAGAAGGGAATTACTATAAAGAGGATTCGGATTATTACTTGCCATCAACTTCGGGGGATGTTTGGACTGAGAACGAGAATGAGGAGATAGATCGAGCAATTGCACTTTCTCTTGTAGAAGAAAGTCAGAAAGCAAACAATGTGAATGACTACAGATCACAATTGGAAGAAGATGAACAACTTGCCAGAGCTATAGAAGAAAGTCTAAATGTGGAGTCTCCTCCCAGATATGGAAATGAAAATATGTATCAACCATATCAACCAATTCAGTATTTCCCGATGGGGTCCAGGATTTGTGCTGGCTGCTATTCTGAGATTGGTTACGGACGATATCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACCTACCAATCTCTGATTATGAGTTCTCCACATCTGGAAATTACCCTTACCATAAATCATGCTATAAGGAAAGCTACCATCCAAAATGTGATGTCTGCAAGCACTTTATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGATCCAAAAATATTGCCCTTCTCATGAACATGATAATACTCCACGCTGTTGCAGCTGTGAGCGAATGGAGGCACAAGAGACAGGATATATTGCTCTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTGGATTCTGCTATCATGGATACTAACGAATGCCAACCCCTTTATGGTGATATACAAAGATTCTATGAAAGCATAAATATGAAACTTGAACAGCAAATTCCACTACTTTTGGTTGAAAGACAAGCACTGAACGAAGCAAGAGAGGGAGAGAAGAATGGCCACTATCACATGCCAGAGACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACTATCTCGAGGCGGCCTAGACTTGGGACAGGAAATGGAGCATTAGACATGAGATCACAGCCTTACAGACTGGCTTCACGCTGTGATGTGACAGCAATTCTCATTTTATATGGTCTTCCAAGGTTGCTTACTGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTGAGGCTTAAAGGTTATCGGACTCTAAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCATATGTGGTTGGAGTCTGAACTTTCTTCTGCATCAGCCTCGTCCTCATCTGCGTCACATACATCTAGAAAAGGTAAAAAACCTGATTTTGAGAAGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCGGATATTTCCCCTGTTTATGGAGATGGGTTTAGGGCAGGTCAAAAAGCCGTACGTAAGTATGGTCTACAAAGGACCCTTCACCATATCAAAATGACGGGGACTTTTCCATTTTAA 1407 0.4257 MGWLSRIFKGSDHKISEGNYYKEDSDYYLPSTSGDVWTENENEEIDRAIALSLVEESQKANNVNDYRSQLEEDEQLARAIEESLNVESPPRYGNENMYQPYQPIQYFPMGSRICAGCYSEIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPSHEHDNTPRCCSCERMEAQETGYIALKDGRKLCLECLDSAIMDTNECQPLYGDIQRFYESINMKLEQQIPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTISRRPRLGTGNGALDMRSQPYRLASRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVLAHMWLESELSSASASSSSASHTSRKGKKPDFEKKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLQRTLHHIKMTGTFPF* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0476 468 ProSitePatterns LIM zinc-binding domain signature. 114 148 IPR001781 -
Apr9g0476 468 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 40 59 IPR003903 -
Apr9g0476 468 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 71 90 IPR003903 -
Apr9g0476 468 CDD LIM_DA1 114 166 - -
Apr9g0476 468 Pfam Protein DA1 264 463 IPR022087 -
Apr9g0476 468 PANTHER PROTEIN DA1-LIKE 1 468 - -
Apr9g0476 468 Coils Coil 63 83 - -
Apr9g0476 468 Pfam LIM domain 114 168 IPR001781 -
Apr9g0476 468 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 107 139 - -
Apr9g0476 468 SMART lim_4 113 165 IPR001781 -
Apr9g0476 468 PANTHER PROTEIN DA1-RELATED 2 1 468 IPR045218 -
Apr9g0476 468 SMART uim 40 59 IPR003903 -
Apr9g0476 468 SMART uim 71 90 IPR003903 -
Apr9g0476 468 Gene3D Cysteine Rich Protein 106 172 - -
Apr9g0476 468 ProSiteProfiles LIM domain profile. 112 172 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0476 Apr-Chr9 6674461 6679877 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr9g0476 DA1-like 2.6e-94 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0476 9 6674461 6679877 Apr9g0476 9 6674461 6679877 ECH