Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0466 ATGTTTGGAGAAAGCAAAAGGAGCTTCCCACGCCCAGAGTTCGTGCAATCGGAGCCCAGAATGTCGACAACCGAAGCCTTAACGGACGACGAATCCACCATAAGAAGCAGCAGCGCGGCGTCACCGATGAGTCCTTACTACTACGACCAGGGAAGGTTAAGCGGCGAAGGCTCACCAATGATGATGTCACCGTGGAACCAAACCACCAGTTCCCCATTCTCCAAACCACAATGGTCACAGACTCAATACGACGATAATGCCCCACAAAACGCACTCATCGGTTCTCTCGTCCGCGAAGAAGGACACATCTATTCCCTCGCCGCGACCGGTGACCTCTTGTACACCGGCTCAGACAGCAAGAACATTCGCGTTTGGAAGAATCTTCAAGAGTATTGCGGCTTCAAATCTAACAGTGGTTTGGTCAAAACAATCATAATCTCTGGCCAGAAAATCTTCACCGGTCACCAAGACGGTAAAATCCGCGTCTGGAAGGTTTCTCCAAAGAACCCCAGCGTCCACAAACGCGCCGGAACGTTACCCACGCTGAAAGACATCTTCAAGAGTTCAATTAAGCCCAGCAACTACGTCGAGGTCCGCAGGCACAAAACGGCTTTGTGGATCAAACATTCCGACGCCGTTTCGTGCTTGAGTCTCTCCGATTGTAAAACCTATCTCTACTCTGCGTCTTGGGACAGGACGATTAAGGTGTGGAGGATCGCCGATTCCAAGTGTCTGGAGTCGATCGCGGCTCACGACGACGCCGTGAACGCCGTCGTGTGCTGCGACGAGGGCGTGATGTTGTCCGGTTCGGCGGACGGAACAGTGAAGGTGTGGAGGAGGGAGGCGCGTGGGAAAGGGACAAAGCACGCGGCGGTGAAGACGCTGCTGAAGCAGGAGTGCGCGGTGACAGCGTTGGTGGTGAATCCGGAGGGGACGATGGTGTATTCGGGTGCTTCGGATGGGATGGTGAATTTCTGGGAACGTGAGAAAGGTTTGGCGCACGGTGGGGTTCTGAAAGGGCACAAGCTTGCGGTGCTGTGTCTCGCTGCGGTGGGGACGTTGGTGTTTAGTGGTTCTGCTGATAAGACCATATGCGTGTGGAAGAGGGAAGGGGTTATCCACACGTGTGTGTCGGTTCTCACGGGTCACGACGGCCCAGTTAAGTGCCTCGCCGTGGAAGCGGATAGGGACGCCGCCGCAAGAGAGAATAAACGCTGGATTGTGTATAGTGGAAGTTTGGATAAGTCCGTAAAGGTTTGGAGCGTTTCCGGGGATAATCAGATGCAGCACGTCAGCATGGGCTCTGATGCTGACTCCTTGCCTTCTGAATCCGATGGGAGCTTCTCTTCGGGCCGGGTCAGCCACAACAGAATTAACTGA 1380 0.5428 MFGESKRSFPRPEFVQSEPRMSTTEALTDDESTIRSSSAASPMSPYYYDQGRLSGEGSPMMMSPWNQTTSSPFSKPQWSQTQYDDNAPQNALIGSLVREEGHIYSLAATGDLLYTGSDSKNIRVWKNLQEYCGFKSNSGLVKTIIISGQKIFTGHQDGKIRVWKVSPKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRRHKTALWIKHSDAVSCLSLSDCKTYLYSASWDRTIKVWRIADSKCLESIAAHDDAVNAVVCCDEGVMLSGSADGTVKVWRREARGKGTKHAAVKTLLKQECAVTALVVNPEGTMVYSGASDGMVNFWEREKGLAHGGVLKGHKLAVLCLAAVGTLVFSGSADKTICVWKREGVIHTCVSVLTGHDGPVKCLAVEADRDAAARENKRWIVYSGSLDKSVKVWSVSGDNQMQHVSMGSDADSLPSESDGSFSSGRVSHNRIN* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0466 459 MobiDBLite consensus disorder prediction 17 41 - -
Apr9g0466 459 Gene3D - 285 457 IPR015943 GO:0005515
Apr9g0466 459 PANTHER PROTEIN JINGUBANG 13 435 - -
Apr9g0466 459 SUPERFAMILY WD40 repeat-like 94 432 IPR036322 GO:0005515
Apr9g0466 459 Gene3D - 195 284 IPR015943 GO:0005515
Apr9g0466 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 247 IPR001680 GO:0005515
Apr9g0466 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 278 IPR001680 GO:0005515
Apr9g0466 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 206 239 - -
Apr9g0466 459 MobiDBLite consensus disorder prediction 1 41 - -
Apr9g0466 459 Pfam WD domain, G-beta repeat 336 368 IPR001680 GO:0005515
Apr9g0466 459 Pfam WD domain, G-beta repeat 375 421 IPR001680 GO:0005515
Apr9g0466 459 Pfam WD domain, G-beta repeat 100 126 IPR001680 GO:0005515
Apr9g0466 459 Pfam WD domain, G-beta repeat 243 278 IPR001680 GO:0005515
Apr9g0466 459 Pfam WD domain, G-beta repeat 209 237 IPR001680 GO:0005515
Apr9g0466 459 Pfam WD domain, G-beta repeat 300 326 IPR001680 GO:0005515
Apr9g0466 459 PRINTS G protein beta WD-40 repeat signature 225 239 IPR020472 -
Apr9g0466 459 PRINTS G protein beta WD-40 repeat signature 266 280 IPR020472 -
Apr9g0466 459 PRINTS G protein beta WD-40 repeat signature 408 422 IPR020472 -
Apr9g0466 459 MobiDBLite consensus disorder prediction 60 82 - -
Apr9g0466 459 CDD WD40 100 421 - -
Apr9g0466 459 Gene3D - 77 188 IPR015943 GO:0005515
Apr9g0466 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 327 IPR001680 GO:0005515
Apr9g0466 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 368 IPR001680 GO:0005515
Apr9g0466 459 MobiDBLite consensus disorder prediction 58 82 - -
Apr9g0466 459 MobiDBLite consensus disorder prediction 431 459 - -
Apr9g0466 459 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 13 435 IPR045182 -
Apr9g0466 459 SMART WD40_4 89 126 IPR001680 GO:0005515
Apr9g0466 459 SMART WD40_4 241 279 IPR001680 GO:0005515
Apr9g0466 459 SMART WD40_4 288 327 IPR001680 GO:0005515
Apr9g0466 459 SMART WD40_4 199 238 IPR001680 GO:0005515
Apr9g0466 459 SMART WD40_4 127 164 IPR001680 GO:0005515
Apr9g0466 459 SMART WD40_4 331 368 IPR001680 GO:0005515
Apr9g0466 459 SMART WD40_4 373 421 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0466 Apr-Chr9 6492146 6493525 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0466 9 6492146 6493525 Apr9g0466 9 6492146 6493525 ECH
Apr1g0650 1 7803280 7808076 Apr9g0466 9 6492146 6493525 PCT