Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0461 ATGCCAACGAAACTACTGAAAACAATGAAAATTCCCGATGGATTCGTCTGTCATATGGAAGGCAGAACGTATGGATTAGTTTCCTTAACTGGTCCTAGTGGAAACACATGGACTGTTCAATTAATTAAGCAAGATAATGATCTGATATTTGATCAAGGATGGCCAATATTTGTCATGGATCATCGTCTAGAATGTGGTGACCTTTTGGTTTTCAGATATGAGGGTCACTTGCATTTCACTGTGCAAGTATTCAATAAGGATGCATGTGAAAAAGAAGTAGCATTTCATTCTGAATGCAGTCAAAATTCATGTGACTTTGATAATGTTAGAGGGCAGAAAAGGGATACGAAGCAGAATTCTTTTGATGTTGTTGAAGGTGTTCCAAAGAAAATGAGAGGTAGCACTGTTGAGAACCAGGAAGTTGAGCTGGGTATTATTGGTAGAGAACTATCCCAGTATGAGGTAGTAAGACCAATTATTGCTAATGAAACCTCCAAAGAATGTTCAGCTAATGATGTCCCTGCGCCTTTTCACATGGAAAGCAGCAACGAAGATGAAGAGGCATCCATCCTGTATAGAAGTCGGAGGGAAGATGACCATTATATGCTCAGTGGAATTTCATTAGCAAACTTATCAGCACATGATGAGAAAAAAGTAGCTCAGTCATTTACTTCCTCTTTTCCGTATTTTGTTAGAATCATGAAAAGCTTCAACGTCAGTGGTTCATATACTCTGAATATCCCATATCAATTTTCAATGGCACATCTTCCAAATTGTAAGATAAAGATTATTCTTCATAATTTGAAAGGAGAACATTGGACTGTTAATTCTGTGCCAACAACTCGAGTGCATACAAGCCATACACTTTGTGGAGGATGGATGGCTTTTGTTCGTGGTAATAACATAAAGGTTGGTGATATCTGCATTTTTGAACTTGTGCACGAGTGTGAATTGCGTGTTTGCATTGCTGGGGTTGGAAAGGATGGGCTAGACAGCCAGCTTGAAAAAGTAGCTATTAGTAGGCCAAGTGCTGGACATGCTGTCACTTGCCATAAGACTTCCAGATACATGCCAATGAATCCTAAAGCCAGCTCCAAATGCATAAGAAAAGTCGATCTATCAGATAAGAAGTGGTCAAAGATTGGTCAAGAAACTGTTTTATCTGTTGACTTAAAGAAGTCAGGTAGAGCTTCAAATACTTCTAACAAGATGGGGCTTTGCCATCAGCCAAAAGCTGCCCATAAAAAGTTGGCTGTTCAGAGGAGACATCGGGTTGAAGATGAGCTAAGCTCACAGGCTAAAGCTGGTTTGAGAATGTTGTTCGCACTTGATGAACAAAGAGTAGCTCAAGCCTTTACTTCCCCTTTTCCTAATTTCGTGAAAATCATGAAAAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATACCAATTCTCCGCTGCTCATCTCCCAGCCTACAAAACAGAAGTTGTGCTTCGAAATTCAAGAGGTGAATGTTGGACTGTGAATTCTGTCCCAGATGCTAAAGGCAGAACAGTTCACACCTTTTGTGGGGGATGGATGGCCTTTGTTCGTGATAATGACATCAATTTTGGAGACACGTGTATTTTTGAACTCGTTGGTCAGTGTGAGATGCAGGTTTACATATCTGGGGTTGGAAAGGAGGGGCTTGACCATCAAAATGGGCATGTGAAACTTAATAGATTAGCTACCGTTCCATCTACCTGCTAA 1737 0.4018 MPTKLLKTMKIPDGFVCHMEGRTYGLVSLTGPSGNTWTVQLIKQDNDLIFDQGWPIFVMDHRLECGDLLVFRYEGHLHFTVQVFNKDACEKEVAFHSECSQNSCDFDNVRGQKRDTKQNSFDVVEGVPKKMRGSTVENQEVELGIIGRELSQYEVVRPIIANETSKECSANDVPAPFHMESSNEDEEASILYRSRREDDHYMLSGISLANLSAHDEKKVAQSFTSSFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELVHECELRVCIAGVGKDGLDSQLEKVAISRPSAGHAVTCHKTSRYMPMNPKASSKCIRKVDLSDKKWSKIGQETVLSVDLKKSGRASNTSNKMGLCHQPKAAHKKLAVQRRHRVEDELSSQAKAGLRMLFALDEQRVAQAFTSPFPNFVKIMKKFNVSGSYTLKIPYQFSAAHLPAYKTEVVLRNSRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVGQCEMQVYISGVGKEGLDHQNGHVKLNRLATVPSTC* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0461 578 Gene3D - 1 89 IPR015300 -
Apr9g0461 578 SUPERFAMILY DNA-binding pseudobarrel domain 8 92 IPR015300 -
Apr9g0461 578 SMART B3_2 459 555 IPR003340 GO:0003677
Apr9g0461 578 SMART B3_2 2 87 IPR003340 GO:0003677
Apr9g0461 578 SMART B3_2 230 326 IPR003340 GO:0003677
Apr9g0461 578 ProSiteProfiles B3 DNA-binding domain profile. 1 87 IPR003340 GO:0003677
Apr9g0461 578 CDD B3_DNA 228 322 IPR003340 GO:0003677
Apr9g0461 578 Gene3D - 444 554 IPR015300 -
Apr9g0461 578 Gene3D - 212 325 IPR015300 -
Apr9g0461 578 CDD B3_DNA 6 85 IPR003340 GO:0003677
Apr9g0461 578 ProSiteProfiles B3 DNA-binding domain profile. 230 326 IPR003340 GO:0003677
Apr9g0461 578 PANTHER B3 DOMAIN-CONTAINING 6 433 - -
Apr9g0461 578 PANTHER B3 DOMAIN-CONTAINING 434 572 - -
Apr9g0461 578 ProSiteProfiles B3 DNA-binding domain profile. 459 555 IPR003340 GO:0003677
Apr9g0461 578 SUPERFAMILY DNA-binding pseudobarrel domain 452 553 IPR015300 -
Apr9g0461 578 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 434 572 - -
Apr9g0461 578 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 6 433 - -
Apr9g0461 578 Pfam B3 DNA binding domain 230 321 IPR003340 GO:0003677
Apr9g0461 578 Pfam B3 DNA binding domain 7 86 IPR003340 GO:0003677
Apr9g0461 578 Pfam B3 DNA binding domain 459 547 IPR003340 GO:0003677
Apr9g0461 578 CDD B3_DNA 457 551 IPR003340 GO:0003677
Apr9g0461 578 SUPERFAMILY DNA-binding pseudobarrel domain 223 324 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0461 Apr-Chr9 6409079 6413365 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr9g0461 B3 1.4e-13 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0461 9 6409079 6413365 Apr9g0461 9 6409079 6413365 ECH