Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0450 ATGCAGCAATCGAACGGTTCTGATTCATCGCAACAGCAACAGTCGGAGCAGAACGCACAGCGACAACCGCCGCCGCCGCAGGCTCAGGCGGTGGCGAGGCCGCAGCAGTGGGTGCCGATGCAGTATCCGGCGGCGATGGTAATGCAGCACCACATGTTGCCGCCTCAACATTACGCGCCACCTCCCTACGTGCCTTTCCACCACCAGTACTCGCAGATGCCGCACGTGCCTCATCAACACCAAAACCAACAGCACCAGAACGGATCCAGCGGCGAGAACAAAACCATCTGGATCGGCGATTTGCATCATTGGATGGACGAAAATTATCTCCATCGCTGTTTCGCTTCCACCGGCGAGATTTCCTCCATCAAAGTTATTCGCAATAAGCAGACTGGTCTATCTGAGGGTTATGGATTTGTGGAGTTCTATTCACATGCCACGGCTGAGAAAGTCTTGCAGAATTATGCTGGAATTTTGATGCCCAATACAGAGCAACCATTCCGTCTGAACTGGGCAACTTTTAGCACGGGAGACAAGGGTTCAGATAATGTTCCTGACCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACGGATAGTTTGTTGCATGAAACTTTTGCTAGTGTATATCCTTCTGTAAAAGCTGCAAAAGTGGTTTTTGATGCCAATACTGGCCGTTCAAAAGGCTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGATCCCAGGCGATGACTCAAATGAATGGAGTTTATTGTTCTAGCAGGCCTATGCGAATTGGTGCTGCAACTCCAAGGAAGTCATCTGGTCATCAACAAGGAGGCCAGTTAAATGGCACATCCAGCCAATCTGAAGCAGATTCAACAAACACCACTATATTTGTTGGAGGACTTGACCCTAATGTTACTGATGAAGATCTTAGGCAGCCATTCTCTCAGTATGGTGAAATAGTTTCTGTTAAGATACCTGTTGGAAAAGGGTGTGGTTTTGTCCAATTCGCAAACAGAAATAATGCCGAAGAGGCATTGCAGAAGCTAAATGGGACAATGATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCTAATAAGCAGTTTAGAATGGATTTTAGCAACCCCTGGAGCGGAGCTTATTATGGGGCCCCCATATATGATGGATATGGATATGCGTTGCCGCCTCCTCATGATCCCAGCTTGTATGCTGCTGCTTATGGGGCTTACCCCTTTTATGGAGGCCACCAACAGCAAGTAAGCTGA 1269 0.4783 MQQSNGSDSSQQQQSEQNAQRQPPPPQAQAVARPQQWVPMQYPAAMVMQHHMLPPQHYAPPPYVPFHHQYSQMPHVPHQHQNQQHQNGSSGENKTIWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQLNGTSSQSEADSTNTTIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPANKQFRMDFSNPWSGAYYGAPIYDGYGYALPPPHDPSLYAAAYGAYPFYGGHQQQVS* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0450 422 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 29 421 - -
Apr9g0450 422 SUPERFAMILY RNA-binding domain, RBD 59 175 IPR035979 GO:0003676
Apr9g0450 422 MobiDBLite consensus disorder prediction 1 25 - -
Apr9g0450 422 Gene3D - 93 173 IPR012677 -
Apr9g0450 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 163 IPR000504 GO:0003723
Apr9g0450 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 258 IPR000504 GO:0003723
Apr9g0450 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 357 IPR000504 GO:0003723
Apr9g0450 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 174 IPR000504 GO:0003723
Apr9g0450 422 Gene3D - 269 370 IPR012677 -
Apr9g0450 422 MobiDBLite consensus disorder prediction 262 288 - -
Apr9g0450 422 Gene3D - 186 262 IPR012677 -
Apr9g0450 422 SMART rrm1_1 188 262 IPR000504 GO:0003723
Apr9g0450 422 SMART rrm1_1 293 360 IPR000504 GO:0003723
Apr9g0450 422 SMART rrm1_1 95 170 IPR000504 GO:0003723
Apr9g0450 422 MobiDBLite consensus disorder prediction 267 288 - -
Apr9g0450 422 MobiDBLite consensus disorder prediction 59 93 - -
Apr9g0450 422 CDD RRM3_NGR1_NAM8_like 291 362 - -
Apr9g0450 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 266 IPR000504 GO:0003723
Apr9g0450 422 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 29 421 - -
Apr9g0450 422 MobiDBLite consensus disorder prediction 1 34 - -
Apr9g0450 422 CDD RRM2_SECp43_like 186 265 - -
Apr9g0450 422 SUPERFAMILY RNA-binding domain, RBD 186 366 IPR035979 GO:0003676
Apr9g0450 422 MobiDBLite consensus disorder prediction 74 93 - -
Apr9g0450 422 CDD RRM1_SECp43_like 95 175 - -
Apr9g0450 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 364 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0450 Apr-Chr9 6275149 6279674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0450 63 372 Eukaryotic Initiation Factors Gene Family AT4G34110 27.302 7.31e-32 125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0450 9 6275149 6279674 Apr9g0450 9 6275149 6279674 ECH
Apr9g0450 9 6275149 6279674 Apr5g1536 5 19247867 19252448 PCT