Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0422 ATGGACGGTTACGATGGAACTGTGAGACTCGGAGCCATTAACTTGAAGCATGATCGCAGTGACTTCGACGCCGGTCCCGATGTATCGGTTTCTTCGCCGGTTACTAGACAAAAAGCAGAAGCCGCTAAGCAATTCATCGAAAATCATTACAAAAACTATCTCCAAGGATTGCAGGATCGCAAAGATAGACGCAGAGCGCTTCAAAGGAAAGTGCAGGAATCTCAAATACCGGCTGAAGAGCAGGAGGAAATGATGAGGAACTTGGAGCGTAAGGAAACTGAGTACATGAGGCTTCAGAGACGTAAAATTGGAATTGATGACTTCGAGCAATTAACAGTGATTGGTAAAGGTGCTTTTGGTGAGGTGAGGTTATGTCGTGCTAAAAATACCGGAGAGATTTTCGCCATGAAGAAATTGAAGAAGTCAGAAATGCTTAGTCGCGGACAGGTGGAACATGTTCGATCTGAGAGGAACTTGCTGGCAGAGGTTGATAGCAGATGCATTGTAAAACTCCATTATTCATTCCAAGATTCAGATTTCCTATATCTCATCATGGAGTATTTACCCGGTGGTGACATTATGACGTTGCTAATGAGAGAAGATATTCTTTCTGAAGATGTTGCTCGCTTCTACATTGCTGAAAGCATTCTTGCTATTCACTCAATACATCAACACAACTATGTACATAGGGATATAAAACCAGATAACCTGATATTGGATAAAAATGGCCATTTGAAGCTTTCAGACTTTGGCTTATGTAAGCCTCTTGATGATAAGTATTCAACAATTTTATTGGAAAATGAAGATTTTACTGGTCAAGAATCAACTAGTGAAACTGAAGGATATTCTGCCTCCCCTTGGTTGATGCCAAAGGAGCAATTGCAGCAGTGGAAACGAAATCGCCGTGCATTGGCATATTCAACTGTTGGAACCCTTGATTATATGGCACCTGAAGTTTTGCTCAAGAAGGGCTATGGAATAGAATGCGATTGGTGGTCTCTTGGGGCAATCATGTATGAGATGCTTATTGGGTATCCTCCATTTTGTTCTGACGATCCAAGGATGGCCTGCCGAAAGATTGTTAACTGGAAAACGTGCCTGAAATTCCCTGAAGAACCCAAGATATCAGCTGAAGCTAAGGATTTGATCTGTCACTTACTGTGTGATGTTGATAGAAGACTAGGAACCAGAGGAGTAGAAGAAATAAAAGCTCATCCGTGGTTCAAGGGTATTCAATGGGACATGCTTTATGAATTGGAAGCTGCATATAAACCTACAGTCACTGGAGACTTGGACACTCAAAACTTTGAAAAGTTTCCTGAAGTAGACGGTCCACCATCCATAACGGCAACTGTTGGACCTTGGCGGAAGATGTTGACTTCCAAAGACACCAACTTCATAGGATATACTTTTAAGAAATCAGACATCCTTAAATCGCTTGATAGTTCAGGAAATGCAGATATCAGAGTCAATGGATCATCGAAAGCCCCTTCCTTGATTTCCTTGTTAGGTCGGATTGATTTGCAAGATACTGTCATATCAGAAACTGAGCAGAAGCCAGAAACTTGA 1569 0.4175 MDGYDGTVRLGAINLKHDRSDFDAGPDVSVSSPVTRQKAEAAKQFIENHYKNYLQGLQDRKDRRRALQRKVQESQIPAEEQEEMMRNLERKETEYMRLQRRKIGIDDFEQLTVIGKGAFGEVRLCRAKNTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSTILLENEDFTGQESTSETEGYSASPWLMPKEQLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGIECDWWSLGAIMYEMLIGYPPFCSDDPRMACRKIVNWKTCLKFPEEPKISAEAKDLICHLLCDVDRRLGTRGVEEIKAHPWFKGIQWDMLYELEAAYKPTVTGDLDTQNFEKFPEVDGPPSITATVGPWRKMLTSKDTNFIGYTFKKSDILKSLDSSGNADIRVNGSSKAPSLISLLGRIDLQDTVISETEQKPET* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0422 522 Coils Coil 78 101 - -
Apr9g0422 522 Gene3D Phosphorylase Kinase; domain 1 78 191 - -
Apr9g0422 522 Gene3D Transferase(Phosphotransferase) domain 1 305 428 - -
Apr9g0422 522 Gene3D Transferase(Phosphotransferase) domain 1 192 259 - -
Apr9g0422 522 ProSiteProfiles Protein kinase domain profile. 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g0422 522 Pfam Protein kinase domain 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g0422 522 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Apr9g0422 522 Pfam Protein kinase C terminal domain 427 471 IPR017892 GO:0004674|GO:0005524|GO:0006468
Apr9g0422 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Apr9g0422 522 ProSiteProfiles AGC-kinase C-terminal domain profile. 409 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Apr9g0422 522 SMART pkinase_C_6 409 473 IPR000961 GO:0004674|GO:0005524|GO:0006468
Apr9g0422 522 SUPERFAMILY Protein kinase-like (PK-like) 83 458 IPR011009 -
Apr9g0422 522 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 508 - -
Apr9g0422 522 SMART serkin_6 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g0422 522 CDD STKc_NDR_like 106 472 - -
Apr9g0422 522 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0422 Apr-Chr9 5847135 5854212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0422 1 519 AGC Kinase Gene Family AT5G09890 78.119 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Apr9g0422 Pkinase 5.6e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0422 9 5847135 5854212 Apr9g0422 9 5847135 5854212 ECH