Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0421 ATGGTGCATCTTTTTCCCTCAACTTTGAACAGTTCTATGTCTCCTCCATTTATGTTATTGTTGGTACTAATGCTTCAGTTGGTGTGGTCAGAAGCTATTGCTAATGCCAATGATTATGAAATAGAAGGAAACCACACAAAGTGCCCAACATTCAACTCCAAGATTATTGTGAACATTGGAGCCGCCATAGACTTGAGTTCAAGGGTGGGAAAGGAGCAGAAAACAGCAATGGAAATTGCTATCAAAGATATAAATAGCCAAAGTTGCTATGAGCTTCTCTTAAACTTCTATGATAATTCTCAATATCGCAACCCTTCTCGTATACTGGCTTCTGATCTTGCAAACAGCAAACAAGTGCAAGTTATCATAGGAACAAAACTTGATGCTGCAACTTTATTCGAGGAGATTCATGAAACCTCAAAGGATGTCTCCATCATATCTCTAACCTCAACAGCTAGTCTAGAAATAACGCCAATCCCATTACCACATTTCATACAAATGTGTAACGATGTTACCCTTCATCTTCACTGCATTGCATCCATCGTAGATCACTTCAATTGGCGAAAGGTGACAGCAATTTATGAACACAACAATGGTTTTGCCTCTTATTCAGAGATATTGACAAGACTCTCTTATTCTCTCCGCCTTGTTAATGCTGAAATTGATCACCACGTAGCTTTTCCTTCAATGAACTCTCTTTCAGACCCAAAAGCTAAAATTGAACAAGAACTTACAAGGCTAAAGAACAAGAGCAATAGGGTTTTTGTTTTTGTACAATCTTCCTTAGAGTTTGCTACTTTACTATTTGAAAAGGCTAAGCAAATGGGTATGATGGGAAAAGGGTCAGTGTGGATCATAGCAGATGATGTAGCCACCCTTCTTGATTCAGTGGATTCTTATGTCATCTTCAACATGCAAGGTGTTGTGGGATGCAAAACTACCTTCATGGAAATGAGTCACACGTTCAAACGGTTCAAATTCATGTTCAGAAGAAAGTTTGGATTGGAATACCCTGAAGAAGAATACCCCCAACCAAGTTTCTTTGCTCTTAGGGCTTATGATGCTGTTTGGACTATTGCTCATGCACTGAAGAAATCACAAGGAAACTTTACTTTGGAAGAGTTATCAAAAAATATTTTAAACAATGATCATGAGGGTCTTAGTGGGAAGATAAGCTTCAAAGAGAGAAAATTATTGGAATCACCAACTTTTAAAATTGTCAATGTTGTTGGAAAAAGTTACAAAGAGTTAGCATATTGGTCACCGGAATTTGGTTTCACTGAGAACCTTGTTAAGCATACTGGTTCTGGTAGAGTGCTTTTAGGTTCTGTGAATTGGCCTGGTGGGTTGGAAACCGTTCCAAAAGGTTGGGTTTACAATAGTACTGAGGGAAGGCCATTGAAAATAGGGGTTCCAGCTATTGATCCATGTCCCCAGTATGTGAATGTAAGCCATGATCAGAAACTTAATGAAACTAAATTCACTGGTTTCTCTATCAATGTCTTTGAAACAGTTGTGAAACGCCTGCCTTATCACCTGCCTTATGCTTTAGTGCCATTTTATGGCTCTTATGATCAAATAGTTGAACAAGTGAACAATAAGAACCTTGATGCTGCTGTTGGAGATATACAAATAGTTGACCATAGATATGCATTTGCGGAATTTTCTCAGCCATATATTGATTCTGGTATCGCCATGGTAGTAAAAGTAAAGCCAGATAAATCCAATGAAATCTGGATGTTCATGGGCGCTTTCACAAAAGAAATGTGGTTGTTAATGGCCGTATTGCATTTGTTCATAGCATTTGTAATCTGGTCCATTGAAGGTGAATTTAATGCAGAGCTCAAGAGTTTTGGGGCCATTCTCTGGTTTTCTGTTACGATATTATTCTTCGCACACAGAGAACCTGTGAAAAGCAACTTGGCCCGAGCTGTGTTAGCACCTTGGTTATTTGCCATTCTCATAGTGACTCAAACCTTTACAGCAAGCCTATCATCCATGTTGACAGTGTCTCAACTTGAACCATCTGTGCCGGATATACAAACACTGCTGAGAACAAATGCTATCATAGGGTGCAATAAGAACACATTTTTGGTCCATTACTTAGTTGATCAACTAAAATTCCAGGCTGAGAATGTGAGAGTATTTGACTCAATCTATGATTTCCCCAGAGCCTTTGAGAACAAAGAAATAGTGGCAGCTTTTACAATTGCCCCTCATGCTGAAGTCTTCCTTGCTACCTATTGCAAGGGCTACATCAAAGCAGGACCCACCTTGAAGCTTGGTGGATTAGGTTTTGCATTCCCAAAAGGTTCAAGTCTAGCAATTGACATATCACGGGCAACCCTAAAAGCCATAGAAAGCGGAGAAGTGCAAAAATTAGAAGAGAAGATGCTATCCACCACCAATTGTGGAACTACAAACAGCAAAATACAAAATGAACAACAATTGGGTCCTCAACCTTTCTTTGGTCTATTTGGCATATGCGGATCCATTGCTATCTTCGCTTTGTTAGCAACAATTATTCGTTTTATTGAAAGGAACGCAGAGACTTTCATGAATTTCATATCATTGCCTCAAAGGGTAATCAAACTCCTTCTTCAAAAGCATCTAAACAAACTCATAAGAAGTTCACCACCTATCCTAGATGCAATTACAGCCCATAACAATGAGCAAGGTACAGTGAGCAATGAGTTACCAACTGTGTTATCTAATTGA 2718 0.3896 MVHLFPSTLNSSMSPPFMLLLVLMLQLVWSEAIANANDYEIEGNHTKCPTFNSKIIVNIGAAIDLSSRVGKEQKTAMEIAIKDINSQSCYELLLNFYDNSQYRNPSRILASDLANSKQVQVIIGTKLDAATLFEEIHETSKDVSIISLTSTASLEITPIPLPHFIQMCNDVTLHLHCIASIVDHFNWRKVTAIYEHNNGFASYSEILTRLSYSLRLVNAEIDHHVAFPSMNSLSDPKAKIEQELTRLKNKSNRVFVFVQSSLEFATLLFEKAKQMGMMGKGSVWIIADDVATLLDSVDSYVIFNMQGVVGCKTTFMEMSHTFKRFKFMFRRKFGLEYPEEEYPQPSFFALRAYDAVWTIAHALKKSQGNFTLEELSKNILNNDHEGLSGKISFKERKLLESPTFKIVNVVGKSYKELAYWSPEFGFTENLVKHTGSGRVLLGSVNWPGGLETVPKGWVYNSTEGRPLKIGVPAIDPCPQYVNVSHDQKLNETKFTGFSINVFETVVKRLPYHLPYALVPFYGSYDQIVEQVNNKNLDAAVGDIQIVDHRYAFAEFSQPYIDSGIAMVVKVKPDKSNEIWMFMGAFTKEMWLLMAVLHLFIAFVIWSIEGEFNAELKSFGAILWFSVTILFFAHREPVKSNLARAVLAPWLFAILIVTQTFTASLSSMLTVSQLEPSVPDIQTLLRTNAIIGCNKNTFLVHYLVDQLKFQAENVRVFDSIYDFPRAFENKEIVAAFTIAPHAEVFLATYCKGYIKAGPTLKLGGLGFAFPKGSSLAIDISRATLKAIESGEVQKLEEKMLSTTNCGTTNSKIQNEQQLGPQPFFGLFGICGSIAIFALLATIIRFIERNAETFMNFISLPQRVIKLLLQKHLNKLIRSSPPILDAITAHNNEQGTVSNELPTVLSN* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0421 905 CDD GluR_Plant 465 799 - -
Apr9g0421 905 Gene3D - 464 588 - -
Apr9g0421 905 Pfam Receptor family ligand binding region 74 410 IPR001828 -
Apr9g0421 905 Gene3D - 763 797 - -
Apr9g0421 905 PIRSF IGluLR_plant 13 897 IPR017103 -
Apr9g0421 905 SUPERFAMILY Periplasmic binding protein-like I 57 457 IPR028082 -
Apr9g0421 905 Pfam Bacterial extracellular solute-binding proteins, family 3 491 798 IPR001638 -
Apr9g0421 905 CDD PBP1_GABAb_receptor_plant 58 430 IPR044440 -
Apr9g0421 905 Pfam Ligand-gated ion channel 799 830 IPR001320 GO:0015276|GO:0016020
Apr9g0421 905 SMART GluR_14 468 801 IPR001320 GO:0015276|GO:0016020
Apr9g0421 905 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 52 857 - -
Apr9g0421 905 SUPERFAMILY Periplasmic binding protein-like II 449 797 - -
Apr9g0421 905 PANTHER GLUTAMATE RECEPTOR 52 857 - -
Apr9g0421 905 Gene3D - 176 339 - -
Apr9g0421 905 Gene3D - 351 463 - -
Apr9g0421 905 Gene3D - 52 175 - -
Apr9g0421 905 Gene3D - 687 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0421 Apr-Chr9 5828565 5836077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0421 48 854 Ion Channels AT2G29120 30.342 1.57e-110 360