Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0414 ATGGCCCTTCTCCTAGACAACAACTGCGAAAGCATTTTACTCTCTTTGGACACTCACAAATCAGTTCCTGCACCCTTCCTCACCAAAACATACCAACTTGTAGACGATCCCAACACCGACCACATAGTCTCTTGGGGCCAAGACGACACCACCTTTGTCGTTTGGCGCCCCCCAGAGTTCGCCAGAGACCTTCTTCCAAACTACTTCAAACACAACAACTTTTCGAGCTTCGTTCGCCAACTCAACACTTATGGTTTCAGAAAGATCGTGCCTGACAGGTGGGAGTTTGCGAATGAGTTCTTCAAAAAAGGAGAGAAGCACTTGCTGTGTAAGATCCACAGAAGAAAAACTCCTCAGCATCAACAAGTGCCTGCAGCCATGAATCTTCACCATCAACATCATTCTTCTCATCAATTTGGACTTAGCGTTCCTCCTACTTTCTTTCCCTTACACAACAGACTCAGCGTTTCGCCTCCCACTGACTCGGACGAGTTGGCCAATTGGTGTGACTCACCGCCACTCACTTCCCCGAGACCAAGTGGAACCGCTTCAATCAACAACAACTTCAACACTGTCACTGCTCTTTCTGAGGACAACGAAAGACTCAGGCGAAGCAACAACATGCTCATGTCAGAGCTTGCACACATGAAGAAGCTTTACAACGACATAATCTACTTCGTTCAGAACCATGTCAAACCCGTGTCTCCAAGCAACACTTTCCCTTCTTTTCTTCTCTGCAATAATAATAATAATAATAATAACACACCACAAGCACAAGCCTCTCAAATAAGTAATGTTTCAACGGTGCAAAGGCCAACGAATCAGCTTGTGGGGTGTTATTCCACTAATACAAAACAAGCTCATGCTGTGAACTCTCCCACTAACAGTTCCATAACAATTGTTGAAGAGGCTAGTAGTGAAAACTGCAGGACCAAGCTTTTTGGGGTGTCTCTTCAATCCAAGAAAAGGATGCACTCCGAGTTTGAATCTAGTAATTTCCTGAGTTCCGAAACAAACAAGGCTCGTTTGGTGTTAGAAAATTATGATTTGGGCTTGAATCTCATGCCCCCGTCTACTTGTTAG 1083 0.4488 MALLLDNNCESILLSLDTHKSVPAPFLTKTYQLVDDPNTDHIVSWGQDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCKIHRRKTPQHQQVPAAMNLHHQHHSSHQFGLSVPPTFFPLHNRLSVSPPTDSDELANWCDSPPLTSPRPSGTASINNNFNTVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVSPSNTFPSFLLCNNNNNNNNTPQAQASQISNVSTVQRPTNQLVGCYSTNTKQAHAVNSPTNSSITIVEEASSENCRTKLFGVSLQSKKRMHSEFESSNFLSSETNKARLVLENYDLGLNLMPPSTC* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0414 360 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g0414 360 Coils Coil 192 212 - -
Apr9g0414 360 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 359 IPR027725 -
Apr9g0414 360 PANTHER BNAC06G00310D PROTEIN 13 359 - -
Apr9g0414 360 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g0414 360 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g0414 360 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g0414 360 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g0414 360 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g0414 360 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Apr9g0414 360 Gene3D - 18 117 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0414 Apr-Chr9 5740079 5741260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0414 1 359 HSF AT1G46264 54.688 7.99e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr9g0414 HSF_DNA-bind 1.6e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0414 9 5740079 5741260 Apr9g0414 9 5740079 5741260 ECH
Apr9g0414 9 5740079 5741260 Apr5g1512 5 19081912 19083113 PCT