Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0412 ATGGATGGTGGCATGCACCAAACACAATCATCTTCAGGGAGAGCCTTGCCCCCTGATTCAGAAGAGTTCTCTACCTTCTGCAACCAACTCCTCCATAATTCTGCACCACTTGGGATGGACCCGAATGATTCCGGGTCGGATTTCACCCCACATAACCCGGTTTCCTCTTCGAATTTCCATTTCTCTGATCCCCATCATGCTAATCCTTACATCCCTCACTCTGATGCCAACTCCTTCAAACAACACCCCATTGTTTCACCTGTTGAGAAGAATGTGGAGGGTTCAGTGTTGCCATCAAAACCTGTCCCAGCACCACGTACTTCATCAAAGAGAAGCAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGGAGGAGTAGGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCAAATTCTAATAAGACGGACAAAGCTTCAATGCTAGACGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTTCAGATGTTAATGGTGAGAAATGGTTTGAGCTGGCATCCAATGTCTTTGCCAGGTGGACTGAGACCTATGATATTGCCTCAGACTGGGTTGAACCTTGATGAGGGCAATGGATTTCAGAATTCCACCAGTGCAGTTGCCTCAACAGCAAATGATGAAAGCTTAGTGCGACATGCTTTCAGTTTCCCAAGGCAATGTAGCATCTCAAATCAGGCTATTATCATACCCTCACTGACAAATAAGGCTACTTCGGACATCTCATCTAGTTTTCAACCCACTATAAAGGATACACTCTACAGCAACATGCCACAAGCGTTTTTGGATACAACAAAGATTGGAAAAACCCCTTCTCCAGACGTGTCTTAA 861 0.4425 MDGGMHQTQSSSGRALPPDSEEFSTFCNQLLHNSAPLGMDPNDSGSDFTPHNPVSSSNFHFSDPHHANPYIPHSDANSFKQHPIVSPVEKNVEGSVLPSKPVPAPRTSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMVRNGLSWHPMSLPGGLRPMILPQTGLNLDEGNGFQNSTSAVASTANDESLVRHAFSFPRQCSISNQAIIIPSLTNKATSDISSSFQPTIKDTLYSNMPQAFLDTTKIGKTPSPDVS* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0412 286 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 162 IPR011598 GO:0046983
Apr9g0412 286 MobiDBLite consensus disorder prediction 111 125 - -
Apr9g0412 286 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 21 262 IPR031066 -
Apr9g0412 286 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 110 173 IPR036638 GO:0046983
Apr9g0412 286 MobiDBLite consensus disorder prediction 45 63 - -
Apr9g0412 286 CDD bHLH_AtPIF_like 113 175 - -
Apr9g0412 286 MobiDBLite consensus disorder prediction 1 32 - -
Apr9g0412 286 PANTHER TRANSCRIPTION FACTOR SPATULA 21 262 - -
Apr9g0412 286 Pfam Helix-loop-helix DNA-binding domain 117 163 IPR011598 GO:0046983
Apr9g0412 286 MobiDBLite consensus disorder prediction 1 125 - -
Apr9g0412 286 Gene3D - 108 172 IPR036638 GO:0046983
Apr9g0412 286 SMART finulus 119 168 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0412 Apr-Chr9 5710602 5713625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0412 113 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 66.364 2.36e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr9g0412 HLH 2.6e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0412 9 5710602 5713625 Apr9g0412 9 5710602 5713625 ECH