Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0411 ATGCAAGGACAGAGGGGTACAATTGGTTCCTTGCCTGAAACCTTAGAATTTGATTGTGGATCTACATCAAGTACTGCTACAGTTGATCAGCATATTTTCTGGAATAATATGCGGAATCCTGCTGAAAATCAGTATATACTTTCCCCTGGTGATATAAATCCATCTTACATGAATTCTATAAATCATGAATGGCAGAACATGAGTGGATGGAGCTTAGGTGAGCCTAGTTCCAGTAACACACAAAACAAGGTTAACAACAATGAGCTGAAAAGAGAGCTAGGATTATCATCTTCAATAAGTTCTGGTGCAATTGCTGGTCCGAGACTTGAAGAAAGGCGCTTTGAACCAAACAATACTTTTTCATTGGACAATGTTACTACAAGTCCTATGTATATGCGCAGCTCTAATTCTCATATGGTGTCGCAGAATCTCAATTTAAATGCAGGTTTAGCAGATAGTGGTAGTGATATTAACTATCATGTGGAACATCCTAACTTGCACAAGTCTAGTGGACCAGTAAATGAGCATGTACCACCTGCAGTTGGTTCCGGCACTTTTCTGCTTCCTTCTGGAAGTAAAGGCTGTTTTATTGAGGGTACTGATGGTAGGCCAGGTTGTTCTCTAGACACTCGCCGTGTATCTTGTAAAAGAAAGGCCATTGAACGAAATGTTGGACAATCTTCGGATGGTGGAAGTTCTAGCTATAGTCAGCATACAAATGGTAGTACTTGGAACACTCTTCCTACTCAGGATTATGCATGGAACAATTTTAATAGATCTGCCCCTGCAGAACAGGTTAATGCACGGCTTGGCCTGAGTATGGGGGATGGAGCCTCTAAAAGTCTTCCCGAGTCTAATGTTGCAGGAAGCTCAGAAAGCTTTCACAGAAATTTTCGTTTGAGGATAAATCCTTCAAGCCAACAAATTTCTGTTCCTCCCACTGCAATCTCAAGTGGGAGTGTGATTAGGAATTCTGATGTTTCTTCATCCTCTCCAATATTGCAACAATTTCATCCTGTTGATAATGCTCCAGACTTGAGGTCAGTACCACCAGTAGATACTATGATTCCTCAAGCCCAAGAACCCTTTGTAATTCATGTTCCTGCTTTACCAAGGAATATGCAGTCATTCAGGTGGAGTGGTGGTTCCAGCTCAACTAATAGCCATTCATCAAACCCAGTTATATGTGGTGATAGGGATAATCTACCAATTGAAGAAACAGGCTTGAGAATTATGCCTAGAAACATTTTAGAACATCCAGTGTTCGTACCTGCAACCAATTTAAGAAATGTGCCTCGAAATCCAGCAAGAGTGTCAAGTAGTGCAAATTTAAGTATTCCAGGAACTGTTGGTTCTTCATTGCGGACTGGATCAAATGCAGCAATCAATCCATCATCTGCCTCGGCAGGGGTTTCTTGGCCTAATCCTCAGCAGTATCCACGCAGGCTATCTGAATATGTTCGTCGGTCTTTGTTTGCTCCTGGTTTGGAAGCTGCTGGAAGTTCAAGTAATAATTATTCTTCCTTGCATGTTCCTTCTACCTCATCTGAATCAAGGGGACTGTCGTCTAGGGTAAACCCTGGATCATCTTCATGGTATGAGAGGCCAAGTGACAGTGAATTTGGAATTCCCTATTCATTACGATCTTTGGCTGTTGCTGGTGAAGGAAGTAGTAGACTTGTATCTGAGCTTCGCAATATGTTGGGCCTCATGCGTAGGAGTGGGAACCTGCGATTTGAGGATGTTATGATCCTCGACCATACAGTGTTGTCTGGAATTGCTGATATTCACGACCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGCTATTGGCCCTAGAAGAACGCATTGGAAATGTGAGTACTGGATTGAGTGAAGAGACCATATTCAAACTTTTGAAACAGAAGAAGTATTCAGCTGAACCTGGTTCTCAGCTTGAGGCAGAACCTTGCTGTGTTTGTCAGGAGGAGTATAACGATGGAGATGATATAGGATCACTGGATTGTGGGCATGATTACCATACAAACTGTATTAAACAGTGGTTAATGCATAAGAATTTGTGTCCAATTTGTAAAACAACGGGCTTGGCAACATGA 2112 0.4195 MQGQRGTIGSLPETLEFDCGSTSSTATVDQHIFWNNMRNPAENQYILSPGDINPSYMNSINHEWQNMSGWSLGEPSSSNTQNKVNNNELKRELGLSSSISSGAIAGPRLEERRFEPNNTFSLDNVTTSPMYMRSSNSHMVSQNLNLNAGLADSGSDINYHVEHPNLHKSSGPVNEHVPPAVGSGTFLLPSGSKGCFIEGTDGRPGCSLDTRRVSCKRKAIERNVGQSSDGGSSSYSQHTNGSTWNTLPTQDYAWNNFNRSAPAEQVNARLGLSMGDGASKSLPESNVAGSSESFHRNFRLRINPSSQQISVPPTAISSGSVIRNSDVSSSSPILQQFHPVDNAPDLRSVPPVDTMIPQAQEPFVIHVPALPRNMQSFRWSGGSSSTNSHSSNPVICGDRDNLPIEETGLRIMPRNILEHPVFVPATNLRNVPRNPARVSSSANLSIPGTVGSSLRTGSNAAINPSSASAGVSWPNPQQYPRRLSEYVRRSLFAPGLEAAGSSSNNYSSLHVPSTSSESRGLSSRVNPGSSSWYERPSDSEFGIPYSLRSLAVAGEGSSRLVSELRNMLGLMRRSGNLRFEDVMILDHTVLSGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETIFKLLKQKKYSAEPGSQLEAEPCCVCQEEYNDGDDIGSLDCGHDYHTNCIKQWLMHKNLCPICKTTGLAT* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0411 703 CDD RING-H2_TTC3 655 697 - -
Apr9g0411 703 MobiDBLite consensus disorder prediction 225 243 - -
Apr9g0411 703 ProSiteProfiles Zinc finger RING-type profile. 656 697 IPR001841 -
Apr9g0411 703 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 702 IPR045191 GO:0061630
Apr9g0411 703 MobiDBLite consensus disorder prediction 433 476 - -
Apr9g0411 703 Pfam Ring finger domain 656 697 IPR001841 -
Apr9g0411 703 SUPERFAMILY RING/U-box 645 699 - -
Apr9g0411 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 700 IPR013083 -
Apr9g0411 703 SMART ring_2 656 696 IPR001841 -
Apr9g0411 703 MobiDBLite consensus disorder prediction 379 399 - -
Apr9g0411 703 MobiDBLite consensus disorder prediction 379 395 - -
Apr9g0411 703 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 702 - -
Apr9g0411 703 MobiDBLite consensus disorder prediction 499 530 - -
Apr9g0411 703 MobiDBLite consensus disorder prediction 223 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0411 Apr-Chr9 5700406 5707679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0411 1 703 C3H Transcription Factor Family AT2G15530 31.952 1.71e-76 258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0411 9 5700406 5707679 Apr3g1641 3 31891523 31902951 ECH
Apr9g0411 9 5700406 5707679 Apr9g0411 9 5700406 5707679 ECH
Apr9g0411 9 5700406 5707679 Apr5g1510 5 19052454 19060392 PCT