Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0407 ATGGGAACAAGCATGAAGGTGCATCAGTTCACACGTGGATTCTGGGAGCACGAACCCTCCCTCACCCTCGGGTGCAAGCGCTTACGCCCCCTTGCCCCCAAGCTTTCTAATAACACCGACACAACCACCACCACTGCTACTACTCCATCTCTTGTTGCGCCTTTCGATCTCAAGAGCTTCATCAAATCAGAAAGTAGCTCCAGAAAACTTGGATCTGATGATAATAAGAAAGACCCACCTTCACCACAAGGCCAGGTGGAAACGCAAATTCCAGGAGGGACAAGGTGGAATCCGACGCAAGAACAGATAGGGATATTGGAGATGCTATACAGAGGAGGGATGCGAACTCCGAATGCTCAACAGATAGAGCAGATCACGGTCCAGCTTAGCAAATACGGCAAGATCGAAGGGAAGAATGTGTTCTATTGGTTCCAAAACCACAAAGCACGTGAGAGACAAAAGCAGAAGCGCAGTAGCCTTGGCCTTGCTCATAGTCCTCGAACTCCCACCACAGTAGTGTCACCCCCTTTTAGTAGTAGTAGTATAATAACTTCTTTGGAGACAACGAGAAAGGGGGAAGTAGTAGAAAGAGACGAGGAAGATAGCCCATTGAAGAAGTGTAGGGGTTGGGTATTTGAGTACTTGGAAGACCAAAGCTGGAAAGAAGAGAAACAAAGAACCCTGGAGCTTTTCCCATTGCACCCGGAAGGCAGATGA 717 0.484 MGTSMKVHQFTRGFWEHEPSLTLGCKRLRPLAPKLSNNTDTTTTTATTPSLVAPFDLKSFIKSESSSRKLGSDDNKKDPPSPQGQVETQIPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQKQKRSSLGLAHSPRTPTTVVSPPFSSSSIITSLETTRKGEVVERDEEDSPLKKCRGWVFEYLEDQSWKEEKQRTLELFPLHPEGR* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0407 238 CDD homeodomain 94 155 IPR001356 GO:0003677
Apr9g0407 238 SUPERFAMILY Homeodomain-like 93 159 IPR009057 -
Apr9g0407 238 Pfam Homeodomain 94 153 IPR001356 GO:0003677
Apr9g0407 238 MobiDBLite consensus disorder prediction 159 188 - -
Apr9g0407 238 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 238 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Apr9g0407 238 MobiDBLite consensus disorder prediction 152 203 - -
Apr9g0407 238 ProSiteProfiles 'Homeobox' domain profile. 99 154 IPR001356 GO:0003677
Apr9g0407 238 MobiDBLite consensus disorder prediction 64 98 - -
Apr9g0407 238 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 238 - -
Apr9g0407 238 MobiDBLite consensus disorder prediction 78 98 - -
Apr9g0407 238 SMART HOX_1 91 158 IPR001356 GO:0003677
Apr9g0407 238 Gene3D - 93 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0407 Apr-Chr9 5643444 5644885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0407 5 160 Wox Gene Family AT1G46480 62.346 1.47e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Apr9g0407 Homeodomain 1.5e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0407 9 5643444 5644885 Apr9g0407 9 5643444 5644885 ECH