Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0405 ATGCGAGTAACTGAAAGCATGAATTCCCTTTTTCTGCAGAATGCAAACCCAATGCACTTCACTTTCCACACCCAAACCATTTCCCCCAAACCAAAACCCATCCAACAGCGCTATTACCCACGCTTACGATGCTGCATCGAAATCGACATGGTGAAGAACAACCAAGGCATCTACGCCCCCAAAAACGACAAAGTCGTTGTCCTCTGGGACCTCGACAACAAACCCCCTCGCGGCCCTCCATACGACGCCGCCGTTTCCCTCAAAACCCTCGCCCAAAGCTTCGGCCACCTTGTCGACTTCTCCGCCTACGCCAACCGCCACGCCTTCGTCCACCTCCCTCAGTGGGTCTTAAACCAACGCCGCGAACGCCGAAACCTCGACATCTTCGAACGCAAGGGCATCGTCACTCCCTCCGAATCCTACACGTGCGGCGTGTGTGGCCGCAAGTGCAAGACCCACTTAGACCTCAAGAAACACTTCAAGCAGCTACACCAGCGCGAGCGCCAGAAGAAGCTTAATCGCTTGAAGTCGCTTAAGGGGAAAAAACGACACCGTTTTAAGGAACGGTTCCTTCGCGGTAACCACAAGTATGATGAGGCTGCAAGGACCTTGATTGTTCCTAAGGTTGGGTATGGACTCGCTGCGGAGTTGCGGCGTGCTGGTGTGTTTGTGAAGACGGTCCAGGATAAGCCTCAGGCTGCGGATTGGGCGCTGAAGAGGCAAATGGTGCACTCCATGAGTAGAGGAATTGATTGGTTGTTTTTGGTTTCTGATGATTCGGATTTTTCGGAGATGTTGAGGAGGGCGAGGGAGAACAATTTGGGAACTGTTGTGGTTGGGGATTGGGATAGGGCTTTGGGTAGACATGCTGATTTGTGGGTTCCTTGGATTGAGGTTGAGAATGGGGAAATTTCGGGTGGGGATTTGGTGTTGAAGAAAAGGGAGGAGAAGAGGAGAATGGATGAATTGGAGCAAGATGGGTTGGTTTTTTATGAGGATGAAGATTTGGATCAAGAGTTCTTGTTGGTGTACAGCGAGGATGACGAGGACTATGAAGAAGAAGAAGAAGAAGAAAAGTTTTATATTTATTGA 1092 0.5046 MRVTESMNSLFLQNANPMHFTFHTQTISPKPKPIQQRYYPRLRCCIEIDMVKNNQGIYAPKNDKVVVLWDLDNKPPRGPPYDAAVSLKTLAQSFGHLVDFSAYANRHAFVHLPQWVLNQRRERRNLDIFERKGIVTPSESYTCGVCGRKCKTHLDLKKHFKQLHQRERQKKLNRLKSLKGKKRHRFKERFLRGNHKYDEAARTLIVPKVGYGLAAELRRAGVFVKTVQDKPQAADWALKRQMVHSMSRGIDWLFLVSDDSDFSEMLRRARENNLGTVVVGDWDRALGRHADLWVPWIEVENGEISGGDLVLKKREEKRRMDELEQDGLVFYEDEDLDQEFLLVYSEDDEDYEEEEEEEKFYIY* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0405 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 169 IPR013087 -
Apr9g0405 363 CDD PIN_LabA-like 151 281 - -
Apr9g0405 363 PANTHER OS06G0166200 PROTEIN 39 355 - -
Apr9g0405 363 ProSitePatterns Zinc finger C2H2 type domain signature. 143 164 IPR013087 -
Apr9g0405 363 Coils Coil 161 181 - -
Apr9g0405 363 Gene3D - 58 298 - -
Apr9g0405 363 PANTHER - 39 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0405 Apr-Chr9 5583560 5586155 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0405 20 349 C2H2 Transcription Factor Family AT5G52010 63.501 1.55e-153 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr9g0405 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0405 9 5583560 5586155 Apr9g0405 9 5583560 5586155 ECH