Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0400 ATGAGTAGCAATATCATGCCTGCAAAATTTTTGGTCACACTCACAATTTTGTACATCTTCTTTGCTCTTCACACGTCAGCACATGATGTTAACAGAGGCAATAGTGGCCACCGAAGCAAAGGTGGTGGTGGCTCAAGCAAAGGCTGCAACAACCAATTGGACACAACACCATGTCAAACTCAAAAATCAACAACTATTCAAGCAGCTCCACCTCTCAAAACAAATGCTTTGGTATTTGCAGACCAAAGACTTGAAGTAGTGTACCCAGTGATTCAAAGATTCAAGTCCATAATCACCTCAGATCCACTAGGAGTTACCAAATCTTGGGTAGGATCAGATATATGCAGCTACAAAGGATTCTACTGTGATGCTCCCCCAGATAACAACTCTGCCATTGCTTTGGCCTCTATTGATTTGAATGGTTTCCAACTATCTGCTGCTACCCTTGATGGGTTTATTGATAAGCTCCCTGATATTGCTCTTTTCCATGCAAATTCCAACAATTTTGGTGGCACCATCTCACCCCAAATAGCTAAGCTACCTTATCTTTATGAGCTTGATGTTAGCAACAACCAATTGTCAGGTCCATTTCCCATGGCTGTTGTAGGCATGAGCACTTTAACATTCTTGGATATAAGGTTCAATTTCTTCTCTGGGGCAGTCCCACCACAAATATTCACACAGAACCTTGAAGTGCTTTTCATCAACAACAATATCTTCACTCAAGGGTTGCCTGATAATTTAGGCAACACACATATTCTCTTACTCACCTTAGCAAACAACAAATTGATGGGTCCAATACCAAGAAGCCTTCCTAAAGCTTTGTCCACTCTGACAGAGGTATTGTTACTCAATAACCAGCTAACAGGTTGCTTGCCTTATGAGATTGGTTTTCTTGAAGAAGCCACAGTGTTTGATATTGGGAATAACCAATTGACAGGTCCTTTACCATTCTCATTGAGTTGCCTTGAGAAAGTGGAGTTGCTAAATTTGGCTAGTAATCTTTTGTATGGAATGGTGCCAGAAGTGGTGTGTGCACGGTTGGTGAACTTGGTCAACTTTTCATTATCTGATAACTATTTTACACATGTGGGGCCAATTTGTAGGATGTTAATTCAGAGAGGGGTGCTTGATGTTAGAAACAATTGTATTCCTGATCTTCCATTCCAGAGATCAGTGATTGAGTGTGCAAATTTCTTTGCAACACCGAGGCTGTGTCCATTCACGTGGTTTCATAGCCTTATCCCTTGTAAGCTTCCTTTTCAAAACTCTCAGGTTCCTTAG 1284 0.4112 MSSNIMPAKFLVTLTILYIFFALHTSAHDVNRGNSGHRSKGGGGSSKGCNNQLDTTPCQTQKSTTIQAAPPLKTNALVFADQRLEVVYPVIQRFKSIITSDPLGVTKSWVGSDICSYKGFYCDAPPDNNSAIALASIDLNGFQLSAATLDGFIDKLPDIALFHANSNNFGGTISPQIAKLPYLYELDVSNNQLSGPFPMAVVGMSTLTFLDIRFNFFSGAVPPQIFTQNLEVLFINNNIFTQGLPDNLGNTHILLLTLANNKLMGPIPRSLPKALSTLTEVLLLNNQLTGCLPYEIGFLEEATVFDIGNNQLTGPLPFSLSCLEKVELLNLASNLLYGMVPEVVCARLVNLVNFSLSDNYFTHVGPICRMLIQRGVLDVRNNCIPDLPFQRSVIECANFFATPRLCPFTWFHSLIPCKLPFQNSQVP* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0400 427 PANTHER BNAA09G53810D PROTEIN 46 425 - -
Apr9g0400 427 MobiDBLite consensus disorder prediction 33 56 - -
Apr9g0400 427 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 46 425 - -
Apr9g0400 427 Pfam Leucine rich repeat N-terminal domain 92 123 IPR013210 -
Apr9g0400 427 Gene3D Ribonuclease Inhibitor 90 395 IPR032675 -
Apr9g0400 427 SUPERFAMILY L domain-like 90 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0400 Apr-Chr9 5521092 5522478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0400 76 403 Leucine-rich Repeat extension Gene Families AT3G24480 42.683 6.67e-85 266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0400 9 5521092 5522478 Apr9g0400 9 5521092 5522478 ECH