Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0398 ATGGGTTCTACTAGGTTGTTCGCGCTGCTATTCATGTTCATGGCGGTTTCATCGGCCTTGGACATGTCGATTATCTCGTACGACAAGACTCACCTAGACAAGTCCACTCAGAGGACCGACGAGAAGGTGATGACCATGTACGAAGAGTGGCTGGTGAAGCACGGCAAGGTCTATAACGCTCTTGGGGAGAAGGATAAGAGGTTCGAGATCTTCAAGGACAACCTACGGTTCATCGACGACCACAATGCTGAGAACCGTACCTACAAGTTGGGTCTGAACAGGTTCGCTGATCTAACCAACGAGGAGTACAGGGCTGGATACTTGGGAACCCGGATCGATCCCAACCGGAGGATGGTTAGGACGAGGAACAAGAGCAACCGTTATGCGCCACGTGTCGGTGACAAACTTCCGGATTTTGTTGATTGGAGACAGGAAGGTGCCGTTGTCCCAGTCAAGGACCAAGGAAGCTGCGGGAGCTGTTGGGCATTCTCAGCAATTTCTGCAGTGGAAGGAATAAACAAGATAGTGACAGGTGATCTAATTTCATTATCAGAACAAGAGTTGGTGGATTGTGATACATCATATAACCAAGGATGCAATGGTGGACTCATGGACTATGCCTTTGATTTCATCATCAATAATGGTGGCATCGATTCTGATGAGGATTACCCTTACCGTGGTGTTGATGGTAGATGTGATCAATATAGAAAAAATGCTAAAGTTGTTGTAATTGATGACTATGAAGATGTTCCTTCTTATGATGAGTTAGCCTTGAAAAAGGCTGTTGCAAATCAGCCAGTGAGCGTAGCTATTGAAGGAGGGGGCAGGGAATTTCAGTTATATATATCGGGTATATTTAGTGGGAGATGTGGGACAGCACTAGACCATGGTGTCGCGGCTGTTGGGTATGGTACAGCAGATGGTCATGATTACTGGCTTGTTAGAAATTCGTGGGGTACTAGCTGGGGAGAGGAAGGCTATATCAGAATGGAGCGAAATTTGGGTACAAGTAGATCAGGGAAGTGTGGAATTGCAATTGAGCCATCTTATCCCATTAAGAAGGGTCCAAATCCCCCAAATCCTGGACCATCACCTCCTTCACCTGTGAAGCCACCAAATGTTTGTGACAACTACTACAGCTGTTCTGACTCTGCTACTTGTTGCTGTATTTTTGAGTTTGGAAACTCTTGCTTTGAGTGGGGTTGCTGTCCTCTTGAGGGTGCTACCTGCTGTGAAGACCACTACAGTTGCTGCCCCCATGACTATCCCATCTGCAACATTTATGCAGGAACTTGCCTCAGGAGCAAGAACAACCCATTTGGAGTTAAGGCATTGAGGCGAACCCCAGCTAAACCCCATTGGGCCTTTGGAGCTAATAACAAGGTTAAGGGTGCTTAA 1398 0.4685 MGSTRLFALLFMFMAVSSALDMSIISYDKTHLDKSTQRTDEKVMTMYEEWLVKHGKVYNALGEKDKRFEIFKDNLRFIDDHNAENRTYKLGLNRFADLTNEEYRAGYLGTRIDPNRRMVRTRNKSNRYAPRVGDKLPDFVDWRQEGAVVPVKDQGSCGSCWAFSAISAVEGINKIVTGDLISLSEQELVDCDTSYNQGCNGGLMDYAFDFIINNGGIDSDEDYPYRGVDGRCDQYRKNAKVVVIDDYEDVPSYDELALKKAVANQPVSVAIEGGGREFQLYISGIFSGRCGTALDHGVAAVGYGTADGHDYWLVRNSWGTSWGEEGYIRMERNLGTSRSGKCGIAIEPSYPIKKGPNPPNPGPSPPSPVKPPNVCDNYYSCSDSATCCCIFEFGNSCFEWGCCPLEGATCCEDHYSCCPHDYPICNIYAGTCLRSKNNPFGVKALRRTPAKPHWAFGANNKVKGA* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0398 465 CDD Peptidase_C1A 137 351 IPR039417 -
Apr9g0398 465 Gene3D Granulin 373 435 IPR037277 -
Apr9g0398 465 PANTHER CYSTEINE PROTEASE 28 381 - -
Apr9g0398 465 Pfam Granulin 386 433 IPR000118 -
Apr9g0398 465 Pfam Papain family cysteine protease 136 352 IPR000668 GO:0006508|GO:0008234
Apr9g0398 465 SMART Inhibitor_I29_2 47 103 IPR013201 -
Apr9g0398 465 Pfam Cathepsin propeptide inhibitor domain (I29) 47 103 IPR013201 -
Apr9g0398 465 PRINTS Papain cysteine protease (C1) family signature 154 169 IPR000668 GO:0006508|GO:0008234
Apr9g0398 465 PRINTS Papain cysteine protease (C1) family signature 296 306 IPR000668 GO:0006508|GO:0008234
Apr9g0398 465 PRINTS Papain cysteine protease (C1) family signature 311 317 IPR000668 GO:0006508|GO:0008234
Apr9g0398 465 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 154 165 IPR000169 -
Apr9g0398 465 SUPERFAMILY Cysteine proteinases 39 352 IPR038765 -
Apr9g0398 465 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 311 330 IPR025661 -
Apr9g0398 465 Gene3D Cysteine proteinases 26 354 - -
Apr9g0398 465 SMART GRAN_2 375 432 IPR000118 -
Apr9g0398 465 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 28 381 - -
Apr9g0398 465 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 294 304 IPR025660 -
Apr9g0398 465 SUPERFAMILY Granulin repeat 372 406 - -
Apr9g0398 465 SMART pept_c1 136 352 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0398 Apr-Chr9 5490328 5494669 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0398 9 5490328 5494669 Apr3g0111 3 1933459 1935868 ECH
Apr9g0398 9 5490328 5494669 Apr9g0398 9 5490328 5494669 ECH
Apr9g0398 9 5490328 5494669 Apr5g1496 5 18920900 18924698 PCT