Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0390 ATGGCATCTTCAAGCAAAGACATGGATCGGGTCAAGGGTCCATGGAGCCCCGAAGAGGACGAAGCGTTACAGAGGCTAGTTCAAGCACATGGTCCCAGAAACTGGTCCTTGATAAGCAAATCGATTCCTGGTCGATCGGGAAAATCGTGCCGTCTACGGTGGTGCAACCAGCTCTCGCCGGAGGTGGAGCATCGTCCCTTCACGCCGGAGGAGGACGACACCATCATTAGAGCGCACTCCCGGTTCGGTAACAAGTGGGCCACCATAGCTCGCCTCCTTAACGGTCGCACCGATAACGCCGTTAAGAATCATTGGAACTCAACTCTCAAGAGAAAATGCTCCGCCGTTAGCTCCGACGATCGTCAACCTCTTAAAAGATCCGCCAGTGTCGGCGCGGGATATTTAAACCCGGATAGCCCGTCAGGCTCCGATTTGAGCGATCCGGGTTTACCCGCTTTGTCGTCGCCATCGGGCTCCGCCCAAGTTCATGTTTCCAGGCCCATTAAGACGCAGTTGGTCGAAACCGCGTCTTCGGCCAACGATCCAGCCACATCTTTGAGTTTATCTTTACCCGGGTTGGAATCCGGGTCCGGGTCGAACCCAGTGACGGTGGCGAAACAAGCGTCACCGGCGGCGGTTCATAACGGCGAGGAGCGTGAGAAGCAGTTGTTTAACGCGGAGTTTTTGAGGGTGATGCAAGAAATGGTTAGAAAAGAGGTGAAGAGTTACATGTCGGAGATTGAACAGAATGGGCTAAGAATGCATACAGAAGCGATTGGAAACGCTGTGGTGAAGCGTATGGGAATTAGCAACGTCGAGTGA 822 0.5377 MASSSKDMDRVKGPWSPEEDEALQRLVQAHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTPEEDDTIIRAHSRFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSAVSSDDRQPLKRSASVGAGYLNPDSPSGSDLSDPGLPALSSPSGSAQVHVSRPIKTQLVETASSANDPATSLSLSLPGLESGSGSNPVTVAKQASPAAVHNGEEREKQLFNAEFLRVMQEMVRKEVKSYMSEIEQNGLRMHTEAIGNAVVKRMGISNVE* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0390 273 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 8 244 - -
Apr9g0390 273 MobiDBLite consensus disorder prediction 112 200 - -
Apr9g0390 273 CDD SANT 14 56 IPR001005 -
Apr9g0390 273 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Apr9g0390 273 SMART sant 11 60 IPR001005 -
Apr9g0390 273 SMART sant 63 111 IPR001005 -
Apr9g0390 273 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Apr9g0390 273 Pfam Myb-like DNA-binding domain 15 72 - -
Apr9g0390 273 PANTHER MYB PROTEIN-RELATED 8 244 - -
Apr9g0390 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Apr9g0390 273 CDD SANT 66 109 IPR001005 -
Apr9g0390 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Apr9g0390 273 Gene3D - 11 63 - -
Apr9g0390 273 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Apr9g0390 273 MobiDBLite consensus disorder prediction 134 200 - -
Apr9g0390 273 Gene3D - 65 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0390 Apr-Chr9 5287413 5288667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0390 6 249 MYB Transcription Factor Family AT4G37260 52.669 1.01e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr9g0390 Myb_DNA-bind_6 2.5e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0390 9 5287413 5288667 Apr3g0105 3 1838531 1839759 ECH
Apr9g0390 9 5287413 5288667 Apr7g0876 7 15795028 15797167 ECH
Apr9g0390 9 5287413 5288667 Apr9g0390 9 5287413 5288667 ECH
Apr9g0390 9 5287413 5288667 Apr5g1490 5 18865251 18866650 PCT