Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0372 ATGGCTCTTGAAGCTCTCAACTCACCAACCACCACTGCCCCATCCTTCCCCTTTGACGACCCAACAATCCCATGGGCAAAGCGGAAGCGTTCAAAGCGTTCCCGTGACCACCCTTCCGAAGAAGAGTACCTTGCTCTCTGCCTCATCATGCTCGCTCGCAGCGGCGGCGCCACCGTCTCCAATCACCGCCACACCGCCACTCCTCCGCCCGAATCACCGGATCCCGCCACTGCCGCCGCTAAACTCAGTTACAAATGTTCCGTTTGTAACAAAGCCTTCCCCTCTTACCAAGCCCTTGGTGGACACAAGGCCAGTCACCGGAAACTCGCCGGCGAAGATCAGTCCACCTCCTCCGCCGCCACCGCCACCAGTTCCGCCACGACAACCACCAACGGCGGAGGTAGGGCCCACGAGTGTTCCATCTGTCACAAGTCCTTTCCCACTGGACAGGCCTTGGGTGGACACAAACGTTGTCACTACGAAGGCGGTGCTGGTAACAGCGCTGTAACCGCCTCTGAGGGTGTGGGCTCCACACACACCGTTAGTCACAGTCACCGTGACTTCGATCTTAACGTCCCTGCTTTGCCGGATTTTTCGACAAAGGTTGGAGAAGACGAGGTTGAGAGTCCTCACCCTGTGATGAAGAAGCCTCGTCTCTTTTTCATTCCAAAGATCGAAATCCCTCAATTCCATTGA 696 0.5675 MALEALNSPTTTAPSFPFDDPTIPWAKRKRSKRSRDHPSEEEYLALCLIMLARSGGATVSNHRHTATPPPESPDPATAAAKLSYKCSVCNKAFPSYQALGGHKASHRKLAGEDQSTSSAATATSSATTTTNGGGRAHECSICHKSFPTGQALGGHKRCHYEGGAGNSAVTASEGVGSTHTVSHSHRDFDLNVPALPDFSTKVGEDEVESPHPVMKKPRLFFIPKIEIPQFH* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0372 231 Gene3D Classic Zinc Finger 81 159 - -
Apr9g0372 231 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 159 IPR013087 -
Apr9g0372 231 MobiDBLite consensus disorder prediction 111 134 - -
Apr9g0372 231 SUPERFAMILY beta-beta-alpha zinc fingers 84 159 IPR036236 -
Apr9g0372 231 MobiDBLite consensus disorder prediction 1 38 - -
Apr9g0372 231 SMART c2h2final6 84 106 IPR013087 -
Apr9g0372 231 SMART c2h2final6 137 159 IPR013087 -
Apr9g0372 231 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Apr9g0372 231 MobiDBLite consensus disorder prediction 107 134 - -
Apr9g0372 231 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 222 IPR044653 GO:0003700
Apr9g0372 231 Pfam C2H2-type zinc finger 136 160 - -
Apr9g0372 231 Pfam C2H2-type zinc finger 84 108 - -
Apr9g0372 231 MobiDBLite consensus disorder prediction 1 17 - -
Apr9g0372 231 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Apr9g0372 231 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Apr9g0372 231 PANTHER ZINC FINGER PROTEIN ZAT10 1 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0372 Apr-Chr9 5004783 5006232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0372 1 227 C2H2 Transcription Factor Family AT1G27730 49.383 2.10e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr9g0372 zf-C2H2_6 8.9e-13 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0372 9 5004783 5006232 Apr8g2416 8 34354766 34356214 ECH
Apr9g0372 9 5004783 5006232 Apr7g0006 7 541471 541935 ECH
Apr9g0372 9 5004783 5006232 Apr9g0372 9 5004783 5006232 ECH
Apr9g0372 9 5004783 5006232 Apr5g1467 5 18708294 18710446 PCT