Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0367 ATGGGAACGGAGAGTTACACGTACATGGGACGCAGTTTGAGCGAACTCAGCATCAACGATGATTCCTCTTCTTCCGCTTTCAGCGACTGCAACAGTGACAGATCTGGCGAATTCGCCACCGCTTCTTCACAAACACGACGACTCCTCATCGCTTGCGCTTCTGAAAATTCCGACGATTTCATCCGTCAACTCGTCGCCGATCTCCACTCCTCCTCCGTCGACGATCAGAAACAAGCCGCTATGGAAATTCGATTACTCGCCAAGAACAAGCCAGAAAATCGCATCAAAATCGCCAAGGCCGGGGCAATTAAACCCCTAATCTCACTCATTTCATCGCAAGACCTTCAGCTTCAGGAATATGGCGTCACCGCGATTTTGAATCTCTCCTTATGCGACGAGAACAAAGAGCTGATAGCCTCTTCCGGCGCGATTAAGCCTCTGGTTCGGGCGCTCAACACCGGAACTTCGACGGCGAAGGAAAACGCGGCGTGCTCGTTGCTCCGCCTCTCGCAGGTGGAGGAGAACAAGGCGGCGATCGGCAGGTACGGCGCAATTCCGTTGCTGGTGAACCTTCTAGAAAGCGGCGGCATCCGCGGGAAGAAGGACGCGTCGACGGCTCTGTATTCGTTGTGTACGGTGAAGGAGAACAAGATGAGAGCGGTGAAGGCGGGGATCATGAAGGTGCTGGTGGAGTTAATGGCGGATTTCGACTCGAACATGGTGGACAAGTCTGCGTACGTGGTGAGCGTGTTGGTGACTGTGCCGGAGGCGCGTGCGGCTCTGGTGGATGAAGGAGGGGTTCCGGTGCTGGTGGAGATCGTGGAGGTTGGAACGCAGAGACAAAAGGAAATCGCGGTGGTTATTCTGTTACAGATATGCGAGGAAAACGTGACGTATCGCACTATGGTGGCTCGCGAAGGTGCGATTCCTCCTTTGGTCGCTTTGTCTCAATCCGGCACCAATCGCGCCAAGCAAAAGGCGGAGAAACTAATTGAGCTTCTGCGGCAACCAAGATCCGGCAACGGCGCTGGTCGGTCGTCAGAAGTGGTGGCATGA 1056 0.5464 MGTESYTYMGRSLSELSINDDSSSSAFSDCNSDRSGEFATASSQTRRLLIACASENSDDFIRQLVADLHSSSVDDQKQAAMEIRLLAKNKPENRIKIAKAGAIKPLISLISSQDLQLQEYGVTAILNLSLCDENKELIASSGAIKPLVRALNTGTSTAKENAACSLLRLSQVEENKAAIGRYGAIPLLVNLLESGGIRGKKDASTALYSLCTVKENKMRAVKAGIMKVLVELMADFDSNMVDKSAYVVSVLVTVPEARAALVDEGGVPVLVEIVEVGTQRQKEIAVVILLQICEENVTYRTMVAREGAIPPLVALSQSGTNRAKQKAEKLIELLRQPRSGNGAGRSSEVVA* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0367 351 SUPERFAMILY ARM repeat 57 331 IPR016024 -
Apr9g0367 351 SMART arm_5 254 294 IPR000225 GO:0005515
Apr9g0367 351 SMART arm_5 172 212 IPR000225 GO:0005515
Apr9g0367 351 SMART arm_5 296 336 IPR000225 GO:0005515
Apr9g0367 351 SMART arm_5 90 130 IPR000225 GO:0005515
Apr9g0367 351 SMART arm_5 213 253 IPR000225 GO:0005515
Apr9g0367 351 SMART arm_5 131 171 IPR000225 GO:0005515
Apr9g0367 351 Pfam Armadillo/beta-catenin-like repeat 132 169 IPR000225 GO:0005515
Apr9g0367 351 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
Apr9g0367 351 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Apr9g0367 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Apr9g0367 351 PANTHER U BOX DOMAIN-CONTAINING 5 344 - -
Apr9g0367 351 Gene3D - 22 196 IPR011989 -
Apr9g0367 351 Gene3D - 198 338 IPR011989 -
Apr9g0367 351 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 5 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0367 Apr-Chr9 4909095 4911324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0367 11 345 U-box Gene Family AT2G23140 47.198 2.98e-87 273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0367 9 4909095 4911324 Apr5g1462 5 18670260 18672876 PCT