Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0016 ATGGACACAGCTCAGTGGGCACAGGGTATTGGAGTGGTTAAACCTATGGAAGGTTCAAAGCCTCCAATGATGGAGAAAAGGGCAAGACCACAGAAAGATCAAGCTTTGAACTGCCCAAGGTGCAATTCAACAAACACTAAATTTTGCTACTACAATAACTATAGCCTCTCTCAACCAAGGTACTTTTGCAAGACTTGTAGAAGGTATTGGACTGAGGGAGGCTCTTTGAGAAATGTTCCAGTGGGTGGAGGCTCAAGAAAGAACAAAAGACCAACACCTTTATCTTCATCATCACCAGCTCCACCGTCAACTAAGAAGTTTCCTGATCTTGCAACCCCACCAAATTTCCCTCAATCTTCATCTCAAAACCCAAAGATCCATCAAGGGCAAGATCTTAACTTAGCATATCCACCAGTTGAGGACTATAATAGCATATCTAAATTCATTGAGGTTCCTTACAACACTGAAGATAACAAGGGTGAAACTCATCATCACCACAACCTCCAAAACCTCACTTCCTCATCTTCTCAGTTGTCTGCAATGGAGCTTCTCAAAACTGGGATTGCTTCATCAAGGGGTGGTTTAAACTCTTTCATGCCATTGTCGGTTTCAGATTCCAATACAATCTATAACTCAACTGGGTTCCCTTTGCAAGACTTTAAGCCTGGCCTTAGCTTCAGTTTAGAAGGGTTTGAAAATGGTTATGGTGGTGGGGGTCTCCAAGGGATTCAAGAGGGTGCAGGGGCAAGGATCTTGTTTCCTGTGGAGGATTTGAAGCAACAGCAGGTCACAAAGAGTGCTGCTGAGTTAGGGCCAAATAGAAGTCAAGGAGATTCAACTGGGTATTGGAATGGCATGTTAGGAGGAGGATCATGGTAG 879 0.438 MDTAQWAQGIGVVKPMEGSKPPMMEKRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRPTPLSSSSPAPPSTKKFPDLATPPNFPQSSSQNPKIHQGQDLNLAYPPVEDYNSISKFIEVPYNTEDNKGETHHHHNLQNLTSSSSQLSAMELLKTGIASSRGGLNSFMPLSVSDSNTIYNSTGFPLQDFKPGLSFSLEGFENGYGGGGLQGIQEGAGARILFPVEDLKQQQVTKSAAELGPNRSQGDSTGYWNGMLGGGSW* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0016 292 ProSiteProfiles Zinc finger Dof-type profile. 36 90 IPR003851 GO:0003677|GO:0006355
Apr9g0016 292 MobiDBLite consensus disorder prediction 89 103 - -
Apr9g0016 292 MobiDBLite consensus disorder prediction 267 282 - -
Apr9g0016 292 ProSitePatterns Zinc finger Dof-type signature. 38 74 IPR003851 GO:0003677|GO:0006355
Apr9g0016 292 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 289 IPR045174 GO:0003700|GO:0006355
Apr9g0016 292 Pfam Dof domain, zinc finger 33 90 IPR003851 GO:0003677|GO:0006355
Apr9g0016 292 MobiDBLite consensus disorder prediction 1 33 - -
Apr9g0016 292 MobiDBLite consensus disorder prediction 267 292 - -
Apr9g0016 292 MobiDBLite consensus disorder prediction 75 129 - -
Apr9g0016 292 MobiDBLite consensus disorder prediction 113 129 - -
Apr9g0016 292 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 16 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0016 Apr-Chr9 258841 260406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0016 23 292 C2C2-Dof Transcription Factor Family AT3G61850 45.862 2.39e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr9g0016 zf-Dof 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0016 - - gmx:778114 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0016 9 258841 260406 Apr1g0716 1 8556841 8557719 PCT