Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2468 ATGGCAATTCAGCATCACAATGACCAACTAGAACCCAGCGAAAATGTCTCATCTGTTCTTGATGCCCTTTATTGTGATGAAGGAAGATGGGAAGAGGAAGAGGAGGGACAAGAAGAAGAAGATGAAGAAAGTGATGTGACAACAAACAATGATGGGGTGCACCACATGGACACTTCTTCTCTTTTTCCTATCCTATTGTTGGAGCAAGACTTGTTCTGGGAGGATGAAGAACTAAACTCACTCTTCTCCAAAGAGAAAGTTCAACAAGAAGGATCCTATAATGATAACAATGTGCACTTTGACTCCTCTCTCTCTCAGCCTCGTCGTGAGGCTGTGGAATGGATGCTTAAAGTCAATGCTCATTATGGATTCTCAGCTCTCACTGCAACACTGGCTGTTAGTTACTTGGATAAGTTCCTTCTAAGCTTCCATTTTCAAAGAGAGAAGCCATGGATGATCCAGCTTGTGGCTGTCACTTGCATCTCTTTGGCTGCAAAAGTTGAAGAAACTCAAGTGCCTCTACTCTTGGACCTTCAAGTGCAAGATAGCAAGTATGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTGTTGGTGTTGTCTACCCTCAAATGGAAGATGCACCCTGTGACCCCACTCTCATTTCTAGATCACATTATAAGAAGGCTTGGATTGAAAAATCATCTCCATTGGGAGTTTCTCAGGCGCTGTGAGCATCTTCTTCTGTCTGTGCTTTTAGATTCAAGATTTGTTGGTTGTCTTCCTTCTGTGTTGGCCACTGCAACAATGTTGCATGTTATAGACCAGATTGAGCACAGTGGAGGGGTGGAATACAAGAATCAGCTTCTTGATGTTCTCAAGATTAGCAAGGAGAAAGTAGATGAATGTTATAATGCCATTCTCCAACTCTCAAATGTGAATAATAATTATGCTAATAACAACAATGGGAAGCGGAAGTATGAACAAATCCCTGGCAGCCCAAGTGGCGTAATTGATGCTGCTTTTAGTTCTGATGGTTCCAACGATTCGTGGGCAGTGGGGTCATCATTATATTCATCACCAGAGCCTCTGTTCAAGAAGAGCAGAACCCAAGGACAACAAATGAAATTGTCACCACTTAACCGGGTCATTGTCGGAGTTGTTGGCACCTCTCCTTAA 1158 0.4283 MAIQHHNDQLEPSENVSSVLDALYCDEGRWEEEEEGQEEEDEESDVTTNNDGVHHMDTSSLFPILLLEQDLFWEDEELNSLFSKEKVQQEGSYNDNNVHFDSSLSQPRREAVEWMLKVNAHYGFSALTATLAVSYLDKFLLSFHFQREKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDSKYVFEAKTIQRMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKNHLHWEFLRRCEHLLLSVLLDSRFVGCLPSVLATATMLHVIDQIEHSGGVEYKNQLLDVLKISKEKVDECYNAILQLSNVNNNYANNNNGKRKYEQIPGSPSGVIDAAFSSDGSNDSWAVGSSLYSSPEPLFKKSRTQGQQMKLSPLNRVIVGVVGTSP* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2468 385 Pfam Cyclin, N-terminal domain 101 207 IPR006671 -
Apr8g2468 385 CDD CYCLIN 108 200 IPR013763 -
Apr8g2468 385 MobiDBLite consensus disorder prediction 29 53 - -
Apr8g2468 385 MobiDBLite consensus disorder prediction 29 46 - -
Apr8g2468 385 Gene3D - 209 300 - -
Apr8g2468 385 Gene3D - 103 208 - -
Apr8g2468 385 SUPERFAMILY Cyclin-like 72 208 IPR036915 -
Apr8g2468 385 PANTHER CYCLINS 44 362 IPR039361 -
Apr8g2468 385 SMART Cyclin_C_2 210 339 IPR004367 -
Apr8g2468 385 Pfam Cyclin, C-terminal domain 210 322 IPR004367 -
Apr8g2468 385 ProSitePatterns Cyclins signature. 108 139 IPR006671 -
Apr8g2468 385 SUPERFAMILY Cyclin-like 211 320 IPR036915 -
Apr8g2468 385 SMART cyclin_7 113 201 IPR013763 -
Apr8g2468 385 PANTHER CYCLIN D3.1 PROTEIN 44 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2468 Apr-Chr8 34690746 34692531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2468 1 303 Core Cell Cycle Gene Families AT4G34160 56.766 3.43e-114 336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2468 8 34690746 34692531 Apr8g2468 8 34690746 34692531 ECH
Apr9g0393 9 5412460 5428171 Apr8g2468 8 34690746 34692531 ECH
Apr5g1494 5 18901001 18902810 Apr8g2468 8 34690746 34692531 ECH
Apr7g0880 7 15824362 15826139 Apr8g2468 8 34690746 34692531 PCT