Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2416 ATGGCGTTAGAGGCTTTGAATTCTCCAACAGCACCCACCGCTTCGTTCCACCACTACCAAGAGGAAGAGGAGGAGGAGGAGGACGTTGACCATCACTTCCGTGAGCCTTGGGCTAAGAGAAAACGCTCCAAACGTCCGCGTTTCGAAAACCCACCCACTGAGGAAGAGTATCTCGCTCTATGCCTCATCATGCTCGCACAAAGCGGCAACAACGACCACACCAATAATAACAATAACGTCTCTCGCCGCCAAACTGAATCATCATCTTCGCAGTCACAGTCACGACAAGAAGCGTCACCGCCGGTGAAGTTAACTCACCGGTGCACCGTCTGCAACAAAGCTTTTCCTTCTTATCAAGCACTCGGTGGTCACAAGGCAAGCCACCGCAAGTCCTCATCGGAAGCCACCACCGCCTCCGCCGTTGCTTCAGTCAACGACAATGTTCCCGCCTCCGCCGGAAGGATGCACGAGTGTTCCATCTGTCACAAGACTTTCCCTACGGGGCAAGCCTTGGGTGGCCACAAGCGCTGCCACTACGACGGCGGTAACAACCACAGTAACGGCACCGTTAACGCGAATAACAGCAGCGGTGTCACTTCCTCTGACGGCGGTGGCGGTGCTGCCTCTTCTCACACCCTCCGTGGGTTTGACCTGAACCTGCCGGCACCGTTGACGGAGTTCTGGGCTCCGTTGGGGTTCGATTCGAAGAAGAAGAAGGATGAGATCATAGGTGGAGGCGGTGAGCAAGAGGTGGAAAGCCCGTTGCCAGTAGCCGCCAAGAGGCCACGTTTGTTTTTGGGCGGTGATGATGGTGAAACGGCGTAG 825 0.5576 MALEALNSPTAPTASFHHYQEEEEEEEDVDHHFREPWAKRKRSKRPRFENPPTEEEYLALCLIMLAQSGNNDHTNNNNNVSRRQTESSSSQSQSRQEASPPVKLTHRCTVCNKAFPSYQALGGHKASHRKSSSEATTASAVASVNDNVPASAGRMHECSICHKTFPTGQALGGHKRCHYDGGNNHSNGTVNANNSSGVTSSDGGGGAASSHTLRGFDLNLPAPLTEFWAPLGFDSKKKKDEIIGGGGEQEVESPLPVAAKRPRLFLGGDDGETA* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2416 274 MobiDBLite consensus disorder prediction 69 103 - -
Apr8g2416 274 MobiDBLite consensus disorder prediction 1 52 - -
Apr8g2416 274 Gene3D Classic Zinc Finger 104 178 - -
Apr8g2416 274 MobiDBLite consensus disorder prediction 238 274 - -
Apr8g2416 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Apr8g2416 274 SMART c2h2final6 106 128 IPR013087 -
Apr8g2416 274 SMART c2h2final6 156 178 IPR013087 -
Apr8g2416 274 Pfam C2H2-type zinc finger 156 180 - -
Apr8g2416 274 Pfam C2H2-type zinc finger 106 130 - -
Apr8g2416 274 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 2 266 IPR044653 GO:0003700
Apr8g2416 274 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 2 266 - -
Apr8g2416 274 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Apr8g2416 274 MobiDBLite consensus disorder prediction 188 207 - -
Apr8g2416 274 SUPERFAMILY beta-beta-alpha zinc fingers 106 178 IPR036236 -
Apr8g2416 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 178 IPR013087 -
Apr8g2416 274 MobiDBLite consensus disorder prediction 188 209 - -
Apr8g2416 274 MobiDBLite consensus disorder prediction 69 100 - -
Apr8g2416 274 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2416 Apr-Chr8 34354766 34356214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2416 1 222 C2H2 Transcription Factor Family AT5G67450 42.308 1.04e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g2416 zf-C2H2_6 1.9e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2416 8 34354766 34356214 Apr8g2416 8 34354766 34356214 ECH
Apr8g2416 8 34354766 34356214 Apr7g0006 7 541471 541935 ECH
Apr9g0372 9 5004783 5006232 Apr8g2416 8 34354766 34356214 ECH
Apr5g1467 5 18708294 18710446 Apr8g2416 8 34354766 34356214 ECH