Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1619 ATGGACACAGCTCAGTGGCCACAGGAGATCGTGGTGAAACCAATAGAAGATATAGTAGTGACAAATACATGTCCAAAGCCTGCAAGTGCTGTGGAGAGAAAGCCAAGGCCACAGAAAGAACAAGCTCTAAACTGTCCAAGGTGTCATTCAATCAACACTAAGTTCTGCTACTACAATAACTATAGCCTCACACAGCCTCGGTATTTCTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGGTCCCTCAGAAACATTCCTGTAGGAGGTGGCTCAAGGAAGAACAAAAGATCTTCCGCTTCTTGTTCCTCACCTAGTAATAATTCAACCAATAAGAAGCTTCCTGATCTGGTTATCACACCTCCAAGTTTGTCACATACCACTTGCACTCAAAACCCTAAGAATATTATTCATGATGGCCAAGATCTTAATTTGGCTTTCCCAGCCACCACCACTACCACCCCAGATTTTAGAAACATATCTGAATTGGTTCAACAAAATAACAACAACAACATGTCAGCTTCAGCATCTAATTCTTCAACAACAACAACTACTACTACTACTACTACTACTACAAGTGCTACTACAGCTTCAACTTCTCACCTTTCCGCATTGGAGCTTCTTACAGGGATCACTTCTGGTTCAAGGGGTATGAATTCCTTCATACCTGTACCGGTTCCAGCTGATCCAAATTCTGTTTACACTTGCGGGTTTCCTTTGCAAGATTTTAAGTCCACCCTGAATTTCTCTTTAGACGGAATTGGAAACGGGTATGCAAGTCTTCAGAATGTTCAAGAGACAAGTGGGAGGCTTTTGTTTCCGTTTGAGGATTTAAAACAGGTAGCTAACACCACCACTACAATGGATCAGAATAATAAGGAGCAACAAGGAGATTCTTCAACTGGGTATTGGACTGGAATGTTAGGAGGAGGAGGATCATGA 942 0.4225 MDTAQWPQEIVVKPIEDIVVTNTCPKPASAVERKPRPQKEQALNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSASCSSPSNNSTNKKLPDLVITPPSLSHTTCTQNPKNIIHDGQDLNLAFPATTTTTPDFRNISELVQQNNNNNMSASASNSSTTTTTTTTTTTTSATTASTSHLSALELLTGITSGSRGMNSFIPVPVPADPNSVYTCGFPLQDFKSTLNFSLDGIGNGYASLQNVQETSGRLLFPFEDLKQVANTTTTMDQNNKEQQGDSSTGYWTGMLGGGGS* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1619 313 MobiDBLite consensus disorder prediction 84 116 - -
Apr8g1619 313 MobiDBLite consensus disorder prediction 169 194 - -
Apr8g1619 313 MobiDBLite consensus disorder prediction 285 313 - -
Apr8g1619 313 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Apr8g1619 313 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Apr8g1619 313 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 310 IPR045174 GO:0003700|GO:0006355
Apr8g1619 313 MobiDBLite consensus disorder prediction 285 303 - -
Apr8g1619 313 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 310 - -
Apr8g1619 313 MobiDBLite consensus disorder prediction 92 116 - -
Apr8g1619 313 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1619 Apr-Chr8 26204961 26207448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1619 1 311 C2C2-Dof Transcription Factor Family AT4G24060 44.413 3.77e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr8g1619 zf-Dof 4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1619 - - pvu:PHAVU_001G080800g 384.8