Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1417 ATGATGCCGCCAGATGACATGCCTGTGAAACCAGCAACAGCCAAAGACCCAGAGATTCCAGGTTCTTCCGGAAACAGAAAATCGACAAGGCCAGCACCAGAGCAAGGCCTAAAGTGTCCAAGATGTGACTCACCCAACACCAAGTTCTGTTACTACAACAACTACAGTCTCACTCAGCCAAGGCATTTCTGCAAAACATGCCGAAGGTACTGGACTAACGGTGGAGCCTTGCGTAACGTCCCCATTGGCGGTGGTTGCAGGAAGAACAAAAAGATCAAATCTTCAACATCAAAACTACTCACATGTGACTCCAAAGACTCTGGTTCTTCTTCAGAGCTTGGTGGCCTTAGGTTCCTTCACTCTCTTTCACCTTCCATTGATTTTCAGCTTGGTGGGTTACCCTTCCCTTCAAGGATTCATAACCATCACCCTCCAACTCCATCCACTGGTGTCTATAACCAGTTCTCTTCTTTTGGGGATGTTTCAGTCACAAGTGCTTCACCTGGCTTTCAACTTGACCCTTCTGGTTCTGCTACCACCTCAAATTCTTTGATTGGTCTAAACTACCCCTTTCCTTCTGGATTCAATGGTGCAAGTCCAATGAACTCTATGAACGTTCATAGTAGCCTTGCTTCTTCAATTGAGTCATTGAGCAATATAAACCAGGACTTGCACTTGAAGCTACAACAGCAGCGATTGGCAATGATTTTTGGTGGGGACAGCCAAAAAGCTGATAGTGGCGTTTCACTTTCTCCACCGGTTAATAGCATTGGGAATCAGAATAAGTTGCAACCCGTTTTTTTTCAGAACCTTGAGATTTCCAAGCCAGAGATTTTGCCAGGTGGCAATGGTTTCAGAAAGGGTGGTCCAATTGAGGACACACAAACCGAATGGTTCTTTGGGAATTCTTTTTCCTCAGTGAATCCTACAGCAACAACTTCCAGCAGTGGAGGCAATGGCCACGATGGTAATAATGCAAACAACAACTGGAGTGGGGTCAATGCTTGGGAGGATTTGCAGGTTCAGCAACCATATAGTGCTTTGCCCTAG 1050 0.4581 MMPPDDMPVKPATAKDPEIPGSSGNRKSTRPAPEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKKIKSSTSKLLTCDSKDSGSSSELGGLRFLHSLSPSIDFQLGGLPFPSRIHNHHPPTPSTGVYNQFSSFGDVSVTSASPGFQLDPSGSATTSNSLIGLNYPFPSGFNGASPMNSMNVHSSLASSIESLSNINQDLHLKLQQQRLAMIFGGDSQKADSGVSLSPPVNSIGNQNKLQPVFFQNLEISKPEILPGGNGFRKGGPIEDTQTEWFFGNSFSSVNPTATTSSSGGNGHDGNNANNNWSGVNAWEDLQVQQPYSALP* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1417 349 MobiDBLite consensus disorder prediction 309 331 - -
Apr8g1417 349 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Apr8g1417 349 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
Apr8g1417 349 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Apr8g1417 349 MobiDBLite consensus disorder prediction 1 37 - -
Apr8g1417 349 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 349 IPR045174 GO:0003700|GO:0006355
Apr8g1417 349 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 6 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1417 Apr-Chr8 22518895 22519944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1417 10 349 C2C2-Dof Transcription Factor Family AT5G65590 38.440 6.87e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr8g1417 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1417 - - gmx:100780729 399.823