Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0682 ATGGAGAGTGGTTGGGAGCCTGAGGTTGAGATATCACCAAATTGTCCAAGGTGTGGTTCTTCCAACACCAAGTTTTGCTACTACAATAACTATAGCTTAACTCAACCGAGGTACTTTTGCAAGGGATGTAGAAGGTATTGGACCAAAGGTGGATCCCTCCGCAATGTTCCAATTGGTGGTGGATGCAGGAAAAATAGAAGAGGTAACAAAACCTTACTAAGACAATCCATTGATGGTTTCACTTTCAAAAATTCACCTTCAGATCATAATAACCATGTGGGTCATTCTTATGATCCTAGAGTGAGGACTTCTTCATCTTCTAGCTCCTCCTCAGTGGTGAGTGATGGACCAAATATTGATCTTGCACTAGTTTATGCAAATTTTCTCAACCCAAAGCCTAATTCTGAAGAAGGGCTTGTGAATAATCCAGATCAAGTGCAAACAGCTTTTGATCCTTGTCTAGAAAATAATTCAAGAATATCCAACACTGAGGTTGGCCCAAGTACATTTCCTGAAGACCTTGGTCCTTCTGGGTGTTTGAATCTGCCAAAGCAAGCATCCATAGAACCCCATTTTAGTGAAAGTAGTAAAAACAGCAATAACCATATGTGCTATAGCGAGTTCAACTCTTTGCAGGCGCCTCAACAAGATGGAATTGATCAATGTAGTAGTCATGGTAGAATGAATTTTGAGCTGCCACCATTGCCAGGGGAAGAGGAAGCCCCACATGATCATATGATGTGGTCCAATTCTGAGGTAATGATGAATCATTCATTTCAAGTCACACAACCACCACTTCTTGGACCTGAAGCTCATGATGCAGACTTGTTAATTGGTAATTGGAGCCCCTTTGATTTGCCAAAGGATGCTTCTTTTTCCGTGCCATGA 888 0.4155 MESGWEPEVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKNRRGNKTLLRQSIDGFTFKNSPSDHNNHVGHSYDPRVRTSSSSSSSSVVSDGPNIDLALVYANFLNPKPNSEEGLVNNPDQVQTAFDPCLENNSRISNTEVGPSTFPEDLGPSGCLNLPKQASIEPHFSESSKNSNNHMCYSEFNSLQAPQQDGIDQCSSHGRMNFELPPLPGEEEAPHDHMMWSNSEVMMNHSFQVTQPPLLGPEAHDADLLIGNWSPFDLPKDASFSVP* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0682 295 Pfam Dof domain, zinc finger 14 67 IPR003851 GO:0003677|GO:0006355
Apr8g0682 295 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 1 291 - -
Apr8g0682 295 MobiDBLite consensus disorder prediction 80 114 - -
Apr8g0682 295 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 291 IPR045174 GO:0003700|GO:0006355
Apr8g0682 295 ProSiteProfiles Zinc finger Dof-type profile. 13 67 IPR003851 GO:0003677|GO:0006355
Apr8g0682 295 ProSitePatterns Zinc finger Dof-type signature. 15 51 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0682 Apr-Chr8 6435401 6436288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0682 5 290 C2C2-Dof Transcription Factor Family AT3G52440 39.535 2.42e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr8g0682 zf-Dof 4.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0682 - - aprc:113871380 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0682 8 6435401 6436288 Apr8g0682 8 6435401 6436288 ECH
Apr4g0386 4 3297637 3298413 Apr8g0682 8 6435401 6436288 PCT