Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1501 ATGTCTGAGGTTATTAAGGACTCTGCCATAAAGCTGTTTGGTAGAACAATTTCTCTGCCACGCAACAAAGAGGTTTCTTCTACTAATGGTTCTTCTTCTGAACCTGTTCATCCTTTACCTCCTGAAGATTGTTCTGATCATTCTCCTCCTTCATCTTCATCTTCTCCACGTGAAGTGAACTCTACAAGGGACCATGAAGCAGAGAGGGATAAGGAGCCATCAAGGGAAGAACTAACCTCAGCACAAGACGAAGAGGCCTCCCATAAAGCCACAGAGGAAGTAAAATCTCCAACATCTTCAAGCATTCTTGAGAACCCAAAGACTCCTTCAACTGAAAGAGAAACCTCTTTGCCAAAACCCTCCAAAAACACAGAACAAAGCGACACAACACAAGACAAAACTCCAAAGAAACCAGACAAGATCCTTGCATGCCCTCGATGCAACAGCATGGACACCAAGTTCTGTTACTACAACAATTACAATGTCAACCAGCCTCGTCACTTTTGCAAGAACTGCCAGAGATATTGGACTGCAGGAGGAACCATGAGAAACGTTCCAGTGGGTGCTGGTCGCCGCAAGAACAAAAACTCTTCTTCTTCTGTCACACACTATCGCCAAATGATGGTTCCTGAGGCTATTCAAATACCCAATGGATCATTACACAGTGCTGTTCTCACCTTTGGATCAGATTCTCCTCTTTGTGACTCTATGGCTTCTGTGTTGAGCCTTGCAGAGAAAACACATAATGGGTTTCATGCATCTAAGCAAAATAGTACTAATAATAATAGGGATGATGATAATAACTTAGGTGGTGGTGCTTCTGTTACGGCTTCAACTTTGTCTGAGAGGAAAAACAATGCTACTAGTTCACAAGAAGAATCAATGGATAATATGAAGAGTTATCAAGGTTTCACTTCTCAATTGTGCTTACCAGGTTCTTCTTCTTCTTGGCCTTATTCATGGAACCCTTCAATGACTCCTCCTGCTTTTTGCCAATCTGTTCCATTCTATCCCACACCAGCATTTTGGGGTTGCATGGCACCACCCTCTTGGAGTGTTCACTCTGTCTCTCCACAATCTTCTGTTAATTACCAATCTGCCCCTAGTTCTGGCCCAAATTCACCTACTTTAGGGAAACACTCAAGAGATGGTGACGTACTCTTTCAAACCAACTCACAGAAAGAAAAGAGCAATATAGAAAACAATGGCGTGTTGATCCCAAAGACATTGAGAATTGATGACCCTACTGAAGCTGCGAAGAGTTCTATATGGTCAACACTAGGGATCAAGAATGAGAAGGGTAATTCTCTGAATGGAGGAGGACTTTTCAAGGCATTTGCATCAAAGGGTAGTGATCAAAAGAATCATGTGGTGGTTGAAGCATCCCCAGTTTTGCAAGCCAACCCTGCTGCTTTGTCAAGGTCTCTTGTGTTCCATGAGAGAACCTGA 1449 0.43 MSEVIKDSAIKLFGRTISLPRNKEVSSTNGSSSEPVHPLPPEDCSDHSPPSSSSSPREVNSTRDHEAERDKEPSREELTSAQDEEASHKATEEVKSPTSSSILENPKTPSTERETSLPKPSKNTEQSDTTQDKTPKKPDKILACPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSSSVTHYRQMMVPEAIQIPNGSLHSAVLTFGSDSPLCDSMASVLSLAEKTHNGFHASKQNSTNNNRDDDNNLGGGASVTASTLSERKNNATSSQEESMDNMKSYQGFTSQLCLPGSSSSWPYSWNPSMTPPAFCQSVPFYPTPAFWGCMAPPSWSVHSVSPQSSVNYQSAPSSGPNSPTLGKHSRDGDVLFQTNSQKEKSNIENNGVLIPKTLRIDDPTEAAKSSIWSTLGIKNEKGNSLNGGGLFKAFASKGSDQKNHVVVEASPVLQANPAALSRSLVFHERT* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1501 482 MobiDBLite consensus disorder prediction 93 128 - -
Apr7g1501 482 ProSiteProfiles Zinc finger Dof-type profile. 142 196 IPR003851 GO:0003677|GO:0006355
Apr7g1501 482 MobiDBLite consensus disorder prediction 20 35 - -
Apr7g1501 482 ProSitePatterns Zinc finger Dof-type signature. 144 180 IPR003851 GO:0003677|GO:0006355
Apr7g1501 482 PANTHER CYCLIC DOF FACTOR 2 1 482 IPR045174 GO:0003700|GO:0006355
Apr7g1501 482 MobiDBLite consensus disorder prediction 356 384 - -
Apr7g1501 482 Pfam Dof domain, zinc finger 140 196 IPR003851 GO:0003677|GO:0006355
Apr7g1501 482 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 482 - -
Apr7g1501 482 MobiDBLite consensus disorder prediction 59 92 - -
Apr7g1501 482 MobiDBLite consensus disorder prediction 356 377 - -
Apr7g1501 482 MobiDBLite consensus disorder prediction 251 297 - -
Apr7g1501 482 MobiDBLite consensus disorder prediction 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1501 Apr-Chr7 22195186 22199330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1501 5 480 C2C2-Dof Transcription Factor Family AT5G39660 40.837 4.92e-91 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr7g1501 zf-Dof 2.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1501 - - gmx:100788246 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1501 7 22195186 22199330 Apr7g1501 7 22195186 22199330 ECH
Apr7g1501 7 22195186 22199330 Apr1g0926 1 13036060 13039435 ECH
Apr7g1501 7 22195186 22199330 Apr9g2996 9 36823350 36827671 ECH
Apr7g1501 7 22195186 22199330 Apr6g0205 6 2161650 2165125 ECH
Apr7g1501 7 22195186 22199330 Apr9g2996 9 36823350 36827671 PCT