Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1378 ATGGGAAGGGGTAGGGTACAGCTGAAGAGGATAGAGAACAAGATCAATCGTCAGGTAACTTTCTCCAAAAGGAGAACTGGGTTACTCAAGAAAGCTCATGAGATCTCTGTGCTCTGTGATGCTGAGGTCGGTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAGTATGCCACTGATTCATGCATGGAGAAGATACTGGAACGCCATGAAAGGTATGCCTATGCAGAGAGACAACTGGTAGGAAATGATTCTGAGACACAGGGAAACTGGACAATTGAATATACTAGACTCAAAGCAAAGGTTGACCTTTTGCAGAGAAACCACAGGCACTATATGGGAGAAGATTTGGCTTCAATGAGCCTCAAAGAGCTTCAAAGTCTGGAGCAACAGTTAGATACCGCTCTCAAGAACATCCGTACACGCAGGAACGATCTCATGTACGAGTCCATCTCTGACCTTCAGAAAAAGGAGAAAGTGATACAAGAGCAGAATAACATGCTCGCAAAGAAGATCAAGGAGAAAGAGCAGGCTGTAGCACAGCACGCAGCTCAGTGGGAGCAGCCAAACTACAGGGTTGACACATCTTTCTTACCACAGCAACCTGTTCCCAGTTTGAACATAGGAGGCAATTACCACCAAGAAGCACCAGAACTAGGAAGGAACGAGCTTGACCTGACCCTGGAACCACTGTATTCTTGCCACCTAGGGTGCTTTTAA 720 0.4597 MGRGRVQLKRIENKINRQVTFSKRRTGLLKKAHEISVLCDAEVGLIVFSHKGKLFEYATDSCMEKILERHERYAYAERQLVGNDSETQGNWTIEYTRLKAKVDLLQRNHRHYMGEDLASMSLKELQSLEQQLDTALKNIRTRRNDLMYESISDLQKKEKVIQEQNNMLAKKIKEKEQAVAQHAAQWEQPNYRVDTSFLPQQPVPSLNIGGNYHQEAPELGRNELDLTLEPLYSCHLGCF* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1378 239 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 218 - -
Apr7g1378 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 218 - -
Apr7g1378 239 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr7g1378 239 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Apr7g1378 239 Coils Coil 118 145 - -
Apr7g1378 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr7g1378 239 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Apr7g1378 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr7g1378 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr7g1378 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr7g1378 239 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Apr7g1378 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr7g1378 239 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr7g1378 239 Coils Coil 154 185 - -
Apr7g1378 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr7g1378 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1378 Apr-Chr7 20866457 20872030 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr7g1378 K-box 8.4e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1378 7 20866457 20872030 Apr7g1378 7 20866457 20872030 ECH
Apr7g1378 7 20866457 20872030 Apr4g2561 4 34432099 34443163 ECH
Apr7g1378 7 20866457 20872030 Apr6g0286 6 2956873 2966322 ECH