Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1281 ATGAAACAGGAATTAGAAGATCAAGGACAGTGTTCTTCTCAAGCGATCAATAACAACAACAACATTCAAGCCTATCAAGATCAGCACCTTCTCCTTCAGCAACAGATGCAACAAAATAGTGACATCTTTGGTGGCTCAAGAGGGTTAATGTTCCCAGCTGAAGTTTCTCCAATCTTGCAACCATGGTCCATGCCTCCGGTTCACTCATTCAACCCGGGTCCGGTTCACTATAACAACAACAACCACCATGATCAAACCTTTGTTGTTCCTCCCACACCATCACCCTATGCAAGCTTCTTCAACAGAAGGGTTCCTTCTCTTCAGTTTGCATGTGAGGGTCCATCCTCTGATCATCACCACCATCTAAGGATCATATCCGATACCCTTGGACCCATGGTTCAACCCGGTTCAACACCCTTTGGACTCCAAGCCGAGTTGGGCAAGATGACTGCTCAAGAAATCATGGAGGCTAAGGCTCTGGCTGCATCAAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAACAACCATCTTGCCAAGCTTCGCAGCTTGTTGCCCAACACAACCAAAACAGATAAAGCTTCATTGCTGGCAGAAGTGATTCAGCATGTGAAGGAGCTGAAGAGGCAAACATCATTGATAGCTGAAACGAGTGTAGTGCCTACTGAAGCTGATGAGTTAACGGTGGATGCAGCCGATGAAGATGGAAAGTTTGTGATCAAAGCCTCTCTGTGTTGTGAAGATAGGTCAGATCTCTTACCTGACCTCATCAAAACCTTAAAAGCGTTAAGGTTGAGAACCCTTAAAGCTGAGATCACCACGCTTGGTGGGCGAGTAAAGAACGTGTTATTCATCACTGGTGACGAGGATAGTAATAATAATATTAATAATAATAATAATTCATGTACCAATAATATTGGTGAACAAAACTTGCAACAACAACAATGTTGTATTAGCTCAATACAAGAAGCACTCAAGGCAGTGATGGAGAAGAGTGGTGGAGATGAATCAGCTTCTGGGAATGTTAAGCGCCAAAGGACTAATAATATCAATATCCTTGAACAAAGGTCTTTATGA 1086 0.4346 MKQELEDQGQCSSQAINNNNNIQAYQDQHLLLQQQMQQNSDIFGGSRGLMFPAEVSPILQPWSMPPVHSFNPGPVHYNNNNHHDQTFVVPPTPSPYASFFNRRVPSLQFACEGPSSDHHHHLRIISDTLGPMVQPGSTPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSVVPTEADELTVDAADEDGKFVIKASLCCEDRSDLLPDLIKTLKALRLRTLKAEITTLGGRVKNVLFITGDEDSNNNINNNNNSCTNNIGEQNLQQQQCCISSIQEALKAVMEKSGGDESASGNVKRQRTNNINILEQRSL* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1281 361 PANTHER TRANSCRIPTION FACTOR BHLH30 76 357 - -
Apr7g1281 361 Pfam Helix-loop-helix DNA-binding domain 164 210 IPR011598 GO:0046983
Apr7g1281 361 SMART finulus 167 216 IPR011598 GO:0046983
Apr7g1281 361 Gene3D - 156 217 IPR036638 GO:0046983
Apr7g1281 361 CDD bHLH_AtAIG1_like 156 234 - -
Apr7g1281 361 PANTHER TRANSCRIPTION FACTOR BHLH30 76 357 IPR045847 GO:0003700|GO:0006355
Apr7g1281 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 216 IPR036638 GO:0046983
Apr7g1281 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1281 Apr-Chr7 19885299 19888668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1281 12 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 57.105 7.18e-114 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr7g1281 HLH 2.5e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1281 7 19885299 19888668 Apr7g1281 7 19885299 19888668 ECH