Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1280 ATGCATCCCTGTGTGTATGTGCTTCTGATTTGGCCTTTGGTTTGTGATTTTCACTGCAATTTTTGGTTTCTGGGAATGCTGGTTGGGAGGAGAGTGATGAGCTGGAGAAGGCTGGCAAATTCTCTCAAAGCTCTGCTAGCTCATGCCATGCTTTTTTTCTTCATTCTTTTGCTTGTTCTCAAGCTTGATCATCAACTCCATCATTCATGGTGGATCATATTTTCACCTCTATGGATCTTTCATGCTATTGTAGTGCGAAGCAGGTTTTCCTTGCCTGCTCCTTTGATGCCTCATGATCGCCGTTGGGCTCCCAGTCATGCCATCTTGGCGATGCCATTACTTGTTGCTTTTGAGCTACTTCTATGCATACATCTTGAGAGCAATTATGTGGTAGAAATAGAGATTGTCTTCTTACCCCTGCTGGCTTTTGAAATGGCAATTTTGATTGATAACATAAGGATGTGTAAGGCTTTGGTGCCGAGAGACGATGGAAGTTTCAGTGGCAGAGCAATATGGAAAAGCCTTCCTCACTTTTGGATTGCAGTATCCATGGTCTTCTTTATTGCTGCTACAATATTCACCCTTCTAAAGATACGTGGTGACTTAGCTTTAGGCTGGTGGGACTTATTTGTTAACTTCGGCATTGCACAGTGCTTTGCCTTTCTTGTTTGTACGAAGTGGCACAATCCAACAATTCATGAAATTTGTCACATTTCAGAACATTCATCATCATTTACTGTAAGATACCTAGACTGTGATAGAGGGATAGTTGTTTCCTCAGATGTAGAAGATAGCCAGCAAAATACATACTGCAATCTGCAAGACATTGGAGGGCATCTTATGAAGATTCCTTTCATTGGTTTTCAACTACTTCTATTTATGCATTTAGCGGAAACACCAACCAGTGCCAAAAATATACCAATGTGGGTCATTTTTTCTCCACTTTTTTTGTTGCAAGGAGCTGGGGTTCTATTTGCATCATATAGATTAGTGGAGAAAATTGTTCTTTTACTTTATAGTGGAGATGTTCCTACTACATACACAACTATAGCATCAAAAGTCCGTGATTGCTTTGGATTCTTCCATCATGGGTCAAGATTCCTAGGTTGGTGGTCAATAGATGAAGGAAGTAGAGAGGAACTTGCTAGACTTTATTGTGCTGATAATTCTGGATATAACACTTTCTCCCCTGATACGGTGAAAAATATGCGTAGAGAAGATCTTGTTGAGGAGATATGGAGACTACAAGCTACACTGAATACGCAGACAGAAGTTGCAAACTTGAGGCAGGAGAAATTTGAAAAACTTCAAAATGAAAAGATTCTATGTAGAGTTTGCTTTGAAAAGCAGATTGATGTAGTCATGCTACCTTGCAGGCATCACATTCTCTGCAGCACTTGTTGCCATAAGTGTATAAGGTGCCCTATATGTCGTGTCTCTATTGAAGAACGAATAGCCTGTAAATGA 1467 0.4029 MHPCVYVLLIWPLVCDFHCNFWFLGMLVGRRVMSWRRLANSLKALLAHAMLFFFILLLVLKLDHQLHHSWWIIFSPLWIFHAIVVRSRFSLPAPLMPHDRRWAPSHAILAMPLLVAFELLLCIHLESNYVVEIEIVFLPLLAFEMAILIDNIRMCKALVPRDDGSFSGRAIWKSLPHFWIAVSMVFFIAATIFTLLKIRGDLALGWWDLFVNFGIAQCFAFLVCTKWHNPTIHEICHISEHSSSFTVRYLDCDRGIVVSSDVEDSQQNTYCNLQDIGGHLMKIPFIGFQLLLFMHLAETPTSAKNIPMWVIFSPLFLLQGAGVLFASYRLVEKIVLLLYSGDVPTTYTTIASKVRDCFGFFHHGSRFLGWWSIDEGSREELARLYCADNSGYNTFSPDTVKNMRREDLVEEIWRLQATLNTQTEVANLRQEKFEKLQNEKILCRVCFEKQIDVVMLPCRHHILCSTCCHKCIRCPICRVSIEERIACK* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1280 488 ProSiteProfiles Zinc finger RING-type profile. 443 478 IPR001841 -
Apr7g1280 488 Pfam Zinc finger, C3HC4 type (RING finger) 441 483 - -
Apr7g1280 488 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 29 486 - -
Apr7g1280 488 SUPERFAMILY RING/U-box 433 483 - -
Apr7g1280 488 Pfam Transmembrane Fragile-X-F protein 60 318 IPR019396 -
Apr7g1280 488 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 29 486 - -
Apr7g1280 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 487 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1280 Apr-Chr7 19867300 19881429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1280 37 485 C3H Transcription Factor Family AT1G73950 56.550 0.0 531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1280 7 19867300 19881429 Apr7g1280 7 19867300 19881429 ECH