Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1278 ATGGCTGGAACATCATGGTTGGTGGACAAAAGTAGAATTGCAACCAAAATAAAAAGTGCATCAGGAGCATGTGATCCGGAAAGGGTTATATGGAAAAGCAATCCTACCAAGGCTTGCCCAAACTGTCAGCACACTATTGACAACAGTGATGTAGCACAAGAGTGGCCTGGCTTACCAAAAGGTGTTAAATTTGATCCATCTGATCAGGAGATAATCTGCCACTTGCTTGCGAAAGTTGGTGTAGGAAATTCGAAACTTCATCCTTTCATTGATGAATTTATCAGCACTCTTGATGAGGATTATGGAATCTGTTATACTCATCCTAGAAATTTACCTGGTGTTAAGCAAGATGGAAGTGCTTCCCACTTCTTCTACAGAGCAATCAAGGCTTACAACACTGGCACCCGAAAGCGCCGTAAAATACAAGACCAAGATTTTGGTGATGTCCGCTGGCACAAGACTGGAAGGACTAAACCAGTTTTCTTGAGTGGCGTTCAAAAAGGCTGTAAAAAGATTATGGTTCTGAATGTGGGCAATATAAGAGGAGGAAAAACTGAGAAAACTAATTGGGTTATGCATCAATATCACCTAGGAACAGAAGAGGATGAAAAAGATGGAGAGTATGTTATCTCAAAAGTGTTTTACCAGCAACAGCAGGTCAAACTGGGTGATAAAGATGACCAGGATGTTCCTGAAACTGCTGAAGCAACAGTTGTGAAAGTGGATCCAGTCACCCCCAAATCTGTGACTCCTGAGCCTCCTTGTGGTGAAAGGCGGCATGCAGATCTAGACCTAGGACAAGAAACTGATACCATTGCTCAGCCTCTTCAGATGGATTGTTTAGATGAAATTCAACCTGATTGCGAAGAGGTTGAGAAAACTGATTCATCCTTGGTAGAACCTCAACCTAATGAAGGGATGGATAATGAAGAAAATAATGCTGGCGAAGGCCAAAAGTGGTGGGACAGCGAGTCGCAGAATCTCTTGGATTCACAACAACTGGTTGAGGCACTCACCTTGTGTGATGATCTACTTCATAGCCAATCTCCGAATAGAGATGGGAAACATGAAGAACATAAGAACCAACCGGGATTTTCTGTTTATGCTCAGCTTGGACCAGAGCATCTGAAGAAGGATATCGAAGAGTGTCAAAACCTTGTTCTTGATCCTGCAAATGTAGAGCATGACACACCTTCAGAGTTTCGACTAAGTCAGCTGGAATTCGGTTCGCAGGATAGTTATTTATCCTGGGGTTACAGCAAGGCAATGAACTAG 1275 0.4282 MAGTSWLVDKSRIATKIKSASGACDPERVIWKSNPTKACPNCQHTIDNSDVAQEWPGLPKGVKFDPSDQEIICHLLAKVGVGNSKLHPFIDEFISTLDEDYGICYTHPRNLPGVKQDGSASHFFYRAIKAYNTGTRKRRKIQDQDFGDVRWHKTGRTKPVFLSGVQKGCKKIMVLNVGNIRGGKTEKTNWVMHQYHLGTEEDEKDGEYVISKVFYQQQQVKLGDKDDQDVPETAEATVVKVDPVTPKSVTPEPPCGERRHADLDLGQETDTIAQPLQMDCLDEIQPDCEEVEKTDSSLVEPQPNEGMDNEENNAGEGQKWWDSESQNLLDSQQLVEALTLCDDLLHSQSPNRDGKHEEHKNQPGFSVYAQLGPEHLKKDIEECQNLVLDPANVEHDTPSEFRLSQLEFGSQDSYLSWGYSKAMN* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1278 424 MobiDBLite consensus disorder prediction 291 318 - -
Apr7g1278 424 Gene3D NAC domain 67 221 IPR036093 GO:0003677|GO:0006355
Apr7g1278 424 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 2 418 - -
Apr7g1278 424 MobiDBLite consensus disorder prediction 297 318 - -
Apr7g1278 424 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Apr7g1278 424 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 418 IPR044799 GO:0003700
Apr7g1278 424 SUPERFAMILY NAC domain 43 216 IPR036093 GO:0003677|GO:0006355
Apr7g1278 424 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1278 Apr-Chr7 19855289 19859570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1278 14 223 NAC Transcription Factor Family AT1G28470 52.511 1.38e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr7g1278 NAM 1.4e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1278 7 19855289 19859570 Apr7g1278 7 19855289 19859570 ECH