Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1276 ATGGCCACTGTTGCAACTATAGGAATTGGAGTGGGAGTGACAAAACTCCAACAAACCCACAAGCCCAAGCACAGGTCCTTGTTCCTAGGCCAGAGGCTTAGGATTAGACCCTCTCAATGCATTGCAAGATTCAGTGTCTCAAACCCCAAAGTGTTTCAAGTTTTAGCATCAGGGGGTGAATGGATTGAAGCAGTTCACAACCTTTTTCTTGGTGTTGGGGTGGGACTTCCATGTACTGTGATGGAGTGTGGAGATATAATCTATAGGAGCACACTTCCCAAGTCCAATGGCTTAACACTCACTGTTCCTGGGATGGTTCTGGCTTTAGGGACTCTCTCTTACCTCTGGGCCACACCTGGTGTGGCACCTGGTTTCTTTGACATGTTTGTTCTTGCTTTTGTTGAAAGGTTGTTCAGACCCACTTACAAAAAGGATGATTTTGTTCTTGGGAAGAAGATGGGGGAGGGATCATTTGGAGTGGTTTATAGAGTGTCACAGGCCAACAAGCCCTCTTCTAAGGAAGGTGACTTAGTCTTGAAGAAGGCGACCGAATATGGGGCTGTAGAAATTTGGATGAACGAGCGCGTACGAAGAGCTTGTGCAAACAGCTGTGCAGATTTTGTTTATGGTTTTCTTGAGAGCTCTACAAAGAAAGCTGCTGAATACTGGCTTATATGGCGATATGAAGGGGATTCCACCCTAGCTGACTTGTTGCAGAATAGAGAGTTTCCATATAATGTTGAAACATTGCTTTTGGGTGAAGCCCAAGCCTTGCCCAAGGGATTAGAAAGAGAGAATAGAATCATTCAAACGATCATGAGGCAGATCTTGTTTGCATTGGATGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCACAGAACATTATTTTTTCTGAAGAGTCTCGTACATTCAAAATCATTGATCTTGGAGCTGCAACTGACCTGAGAGTTGGCATCAACTACATTCCAAAGGAATTTCTTTTGGATCCAAGATATGCTGCACCAGAGCAATATATCATGAGTACGCAAACTCCATCAGCACCCTCAGTTCCTGTGGCAACTGCACTTTCCCCAGTCTTGTGGCGGTTGAATTCACCTGACAGATTCGATATCTATAGTGCTGGTTTAATCTTTCTCCAAATGGCATTTCCAGGTTTACGCACTGATAATAGCCTCATACAATTCAACCGTCAATTGAAGAGGTGTGACTATGACTTAGTTGCTTGGAGAAAAAATGTAGAACCGCGATGCGGCCCTGAAATTAGGAGGGGCTTTGAATTGTTGGATTTAGATGGTGGAATAGGATGGGAACTTCTGACATCAATGGTAAGGTACAAAGCAAGGCAAAGGCTGAGTGCTAAAGCAGCATTAGCTCATCCTTACTTTGACAGAGAAGGCTTGTTGGCATTGTCTTTCATGCAAAACCTGAGGTTGCAGCTCTTACGAGCCACTCAGCAGGATTATGGAGAAGCTGCCAAGTGGATTACTCAGCTAATGGCAAAATCAGGAACACAGAAGGATGGTGGATTCACTGAAGCTCAGCTTCAGGAACTGAGGGAAATTGAACCTAAAAAGAAGGCTAGTGCACAGAGAAATGCTCTAGCTTCAGCTCTTAAACTTCAGAGGAAAATTATAAGAACCTTAAATGAGAGTATGGATGAGCTCACCAGACGCAGGAAAAGGCTTTGGTGGAGCAGATGGATCCCAAGAGAGGAATGA 1728 0.4421 MATVATIGIGVGVTKLQQTHKPKHRSLFLGQRLRIRPSQCIARFSVSNPKVFQVLASGGEWIEAVHNLFLGVGVGLPCTVMECGDIIYRSTLPKSNGLTLTVPGMVLALGTLSYLWATPGVAPGFFDMFVLAFVERLFRPTYKKDDFVLGKKMGEGSFGVVYRVSQANKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLESSTKKAAEYWLIWRYEGDSTLADLLQNREFPYNVETLLLGEAQALPKGLERENRIIQTIMRQILFALDGLHSTGIVHRDIKPQNIIFSEESRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSVPVATALSPVLWRLNSPDRFDIYSAGLIFLQMAFPGLRTDNSLIQFNRQLKRCDYDLVAWRKNVEPRCGPEIRRGFELLDLDGGIGWELLTSMVRYKARQRLSAKAALAHPYFDREGLLALSFMQNLRLQLLRATQQDYGEAAKWITQLMAKSGTQKDGGFTEAQLQELREIEPKKKASAQRNALASALKLQRKIIRTLNESMDELTRRRKRLWWSRWIPREE* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1276 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Apr7g1276 575 Pfam Protein kinase domain 149 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr7g1276 575 SUPERFAMILY Protein kinase-like (PK-like) 132 467 IPR011009 -
Apr7g1276 575 Gene3D Phosphorylase Kinase; domain 1 133 227 - -
Apr7g1276 575 CDD STKc_SNT7_plant 151 465 - -
Apr7g1276 575 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 13 575 IPR044803 GO:0004674|GO:0009579
Apr7g1276 575 Gene3D Transferase(Phosphotransferase) domain 1 254 469 - -
Apr7g1276 575 Coils Coil 541 561 - -
Apr7g1276 575 SMART serkin_6 147 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr7g1276 575 ProSiteProfiles Protein kinase domain profile. 147 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr7g1276 575 PANTHER SERINE/THREONINE-PROTEIN KINASE STN7, CHLOROPLASTIC 13 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1276 Apr-Chr7 19834598 19840521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1276 265 466 Core Cell Cycle Gene Families AT2G38620 30.986 4.99e-18 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Apr7g1276 Pkinase 9.3e-21 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1276 7 19834598 19840521 Apr7g1276 7 19834598 19840521 ECH