Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1270 ATGCAAACTCACCCTTTCTCCTACATACCCTCTTGTCCAAGAAGTGCCTTCTTAGAACCTGATCATGATCATGAAGCTGTAGTTGATGAAGCCTCCATCTCCCTCTCTCTTGGCCCTCCTGGCCAACAACACAACCCCAAAGTCTCTTCCTCCTTCTCAAACCACCCTTCTACTCTGCACCATCATCACCAGCAAAACCCTACCTCTGAAGACCAAAGTGGTGTAACTGTTGCCCTTCACATTGGCCTTCCCAATCCCACTACTTCACCAAACAGCACCAACCACCCCACTACCAAACCTCATGATCTTCATTTGGCTTCTACTCCCATTCAGGGTCAATATTGGATCCCTTCTCCTGCTCAAATCCTCATTGGACCCACCCAGTTCTCTTGCACTGTTTGCAACAAAATGTTCAACCGATTCAACAACATGCAGATGCATATGTGGGGACACGGGTCACAATATAGGAAAGGGCCTGAATCATTGAGAGGGGCAAAGCCAGCTTCTTCAATGCTAAGGCTTCCTTGCTATTGTTGTGCTGAGGGGTGCAAGAACAACATAGATCATCCAAGGTCAAGGCCATTGAAGGATTTTAGGACACTTCAGACACACTACAAGAGAAAGCATGGAGCAAAGCCATTTGGGTGTAGGAAGTGTGGGAAACCATTTGCTGTAAGAGGGGATTGGAGAACACACGAGAAGAATTGTGGGAAGCTTTGGTTTTGCATCTGTGGCTCTGATTTCAAGCACAAGAGGTCTCTCAAAGACCATGTTCGTGCCTTTGGTGATGGTCACGCTCCACACACTGTGGAGAGTTGTGATCAAATGGGAGAAGACGAATTATTAGGTGATGAAGATGATGAGGACTTAGAATTAGATGAAGAAGATGAAGATGATAGTAATAATAATAGTGAAAGAGAGAAAGGGTGCGAGAAGATGGAGACAAACAGTGAAATGAAAGCTAAGGTTCTTGCATTTAATGCCAGAAGTGGCAAGAGAGAGAGAGGTAGTCAAGAGTATTCAGTGACTGCAGATGAGAGACAGACATGCAGACAAGGGCAGTCACAGATTCTACTGTTCAAAACTTTGCATTTGCATTGCCATAGATATTGA 1113 0.4519 MQTHPFSYIPSCPRSAFLEPDHDHEAVVDEASISLSLGPPGQQHNPKVSSSFSNHPSTLHHHHQQNPTSEDQSGVTVALHIGLPNPTTSPNSTNHPTTKPHDLHLASTPIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQMGEDELLGDEDDEDLELDEEDEDDSNNNSEREKGCEKMETNSEMKAKVLAFNARSGKRERGSQEYSVTADERQTCRQGQSQILLFKTLHLHCHRY* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1270 370 MobiDBLite consensus disorder prediction 36 73 - -
Apr7g1270 370 Gene3D Classic Zinc Finger 170 261 - -
Apr7g1270 370 MobiDBLite consensus disorder prediction 290 314 - -
Apr7g1270 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 129 156 IPR013087 -
Apr7g1270 370 PANTHER ZINC FINGER PROTEIN WIP6 4 301 - -
Apr7g1270 370 MobiDBLite consensus disorder prediction 35 73 - -
Apr7g1270 370 ProSitePatterns Zinc finger C2H2 type domain signature. 131 151 IPR013087 -
Apr7g1270 370 SUPERFAMILY beta-beta-alpha zinc fingers 197 234 IPR036236 -
Apr7g1270 370 PANTHER ZINC FINGER PROTEIN WIP2 4 301 IPR043584 GO:0003700|GO:0010468
Apr7g1270 370 SUPERFAMILY beta-beta-alpha zinc fingers 104 150 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1270 Apr-Chr7 19764764 19767446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1270 29 270 C2H2 Transcription Factor Family AT1G13290 72.653 1.56e-121 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr7g1270 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1270 7 19764764 19767446 Apr7g1270 7 19764764 19767446 ECH