Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1250 ATGGCTTCCCTCTCCTTCTCCGCCGCCTTCACCGGTCGTCGCCTCCCCGCCACGGCGTCGCCCTCCACACCGCCTCGCCGGAATCCCTCCCTGTCGGTGCAATCCAAGATCAGAGAGATTTTCATGCCGGCCCTCAGCTCCACCATGACGGAGGGCAAAATCGTCTCATGGGTTAAGTCCGAGGGCGATGCCCTTTCCAAGGGCGACAGCGTTGTCGTCGTCGAGTCCGACAAGGCTGACATGGACGTTGAGACATTTTACGACGGCATCCTCGCTGCCATTGTCGTCGCCGAGGGCGAAACCGCCCCCGTTGGCGCCCCCATTGGCCTCCTCGCTGAAACTGAGGAGGAAATCGCTGAGGCCAGGGCCAAGGCGGCCAATTCCGCGAAAATTGGAGCTCCGAACCCTGCTCCGGAGACCACTCCCCCGCCGGCGCCGGTTTCCGACGCGCCCCGGAAGGTTGTGGCGACGCCGTATGCGAAGAAGCTCGCGAAACAGCACAAGGTGGATATTGGATTGGTTGTTGGGACTGGTCCTTATGGGAGGGTCACTCCTGCCGACGTGGAGAAGGCCGCCGGAATTACACCGGCGGCGAGTAATGTAGCTCCGCCGGCAGTGGCTTCTACGGTGCCAAAAGCTGCTGCTGCTGCTCCCCCTCCGGTGACCTCCTCGCCTCCAATTCCGGGTTCTAGTGTTGTCCCTTTTACAACGATGCAATCTGCGGTTGCAAAGAACATGGTGGAGAGTCTCTCTGTGCCTACATTCCGTGTTGGGTACCCTGTAACCACTGATGCACTTGATGCTCTGTATGCGAGGGTGAAATCAAAGGGAGTGACAATGACTGCGATTCTAGCCAAGGCAGCTGCAATGGCACTGGTGCAACATCCGGTGGTGAATGCTTCCTGCAAAGATGGAAAGAATTTTGCCTATAATAGTAACATTAATATTGCTGTTGCTGTGGCAATCAATGGTGGTTTGATTACCCCGGTTCTTCAGGATGCGGATAAGTTGGACCTATATCTTTTGTCTCAAAAATGGAAAGAATTAGTTGAAAAAGCTCGTGCAAAGCAATTGCAACCTCATGAGTATAATTCAGGAACTTTCACTCTTTCTAATTTGGGAATGTTTGGAGTTGACAGGTTCGATGCCATTCTTCCTCCAGGCCAGGGTGCTATAATGGCAGTCGGAGCATCAAAGCCTACTGTTCTGGCTGATAAGGATGGTTTCTTCAGTGTAAAAAATAAAATGCTGGTAAATGTAACCGCAGATCACCGAATAATCTATGGGGCTGACTTGGCTGCATTCCTTCAGACATTCTCAAAAATTGTTGAAAACCCTGAAAGCCTAACATTGTAG 1356 0.5317 MASLSFSAAFTGRRLPATASPSTPPRRNPSLSVQSKIREIFMPALSSTMTEGKIVSWVKSEGDALSKGDSVVVVESDKADMDVETFYDGILAAIVVAEGETAPVGAPIGLLAETEEEIAEARAKAANSAKIGAPNPAPETTPPPAPVSDAPRKVVATPYAKKLAKQHKVDIGLVVGTGPYGRVTPADVEKAAGITPAASNVAPPAVASTVPKAAAAAPPPVTSSPPIPGSSVVPFTTMQSAVAKNMVESLSVPTFRVGYPVTTDALDALYARVKSKGVTMTAILAKAAAMALVQHPVVNASCKDGKNFAYNSNINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARAKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVLADKDGFFSVKNKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1250 451 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 62 91 IPR003016 -
Apr7g1250 451 CDD lipoyl_domain 39 111 - -
Apr7g1250 451 Gene3D - 150 193 IPR036625 GO:0016746
Apr7g1250 451 MobiDBLite consensus disorder prediction 129 151 - -
Apr7g1250 451 Gene3D - 226 450 IPR023213 -
Apr7g1250 451 SUPERFAMILY CoA-dependent acyltransferases 231 450 - -
Apr7g1250 451 Pfam e3 binding domain 154 189 IPR004167 GO:0016746
Apr7g1250 451 Coils Coil 111 131 - -
Apr7g1250 451 Pfam Biotin-requiring enzyme 39 109 IPR000089 -
Apr7g1250 451 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 155 192 IPR004167 GO:0016746
Apr7g1250 451 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 148 192 IPR036625 GO:0016746
Apr7g1250 451 ProSiteProfiles Biotinyl/lipoyl domain profile. 37 115 IPR000089 -
Apr7g1250 451 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 7 451 IPR045257 GO:0006086|GO:0045254
Apr7g1250 451 Gene3D - 32 135 - -
Apr7g1250 451 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 231 450 IPR001078 GO:0016746
Apr7g1250 451 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 4 OF PYRUVATE DEHYDROGENASE COMPLEX, CHLOROPLASTIC 7 451 - -
Apr7g1250 451 SUPERFAMILY Single hybrid motif 36 129 IPR011053 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1250 Apr-Chr7 19571514 19575914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1250 18 451 Acyl Lipid Metabolism Gene Families AT3G25860 74.833 0.0 630
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1250 7 19571514 19575914 Apr7g1250 7 19571514 19575914 ECH