Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1248 ATGAAGATTTTCGTGAAGACTCTGAAAGGAACGCACTTCGAAATTGAAGTGAACCCCTCAGACACGCTTTCTGAAGTAAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTCTAAAGGATGGTACCACTTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTTATTGTAATTATGCTATCAAAGACTAAGAGCTCATCTGGTGAAGGATCTACTACTTCAACTGCACCTTCAGCTAAGATTATGCAGACAAGTGCACCTCCTGCTTCAACCTCTGTTTCCTCTGCACCTCAAGCTCCTGCTGCAACAGTGGCAACGCCTCCACCTGTTACTGCCCCAGCTGCTACACCTGCAGCAGCTCCTGCTCCCTTATCTTCAGGCCCCGCTGTGGCTGGGTCTGATATATATGGGCAGGCAGCATCAAATCTCGTTGCTGGAAGCAACTTGGAGGAAACAATTCAGCAAATCCTTGATATGGGTGGTGGAAGCTGGGATAGGGATACTGTTGTCCGAGCCCTACGTGCTGCTTATAACAATCCCGAGAGAGCTGTTGAATATTTGTATTCAGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACTCGAGTGCCTGCAAGTGGACAACCTGCAAATCCAACTGCTGCTCCACAAGCAGCGCAACCAACATCGGTTCCATCTAGTGGACCTAATGCTAATCCTTTAGACCTCTTTCCCCAGGGACTTCCTAATGTTGGTTCTGGCGCTGCTGGTGCTGGCACTTTAGATTTTCTGCGCAACAGTCAACAGTTCCAAGCCTTGCGGGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCAAGAGCATCAAGTTGACTTCCTTCGCCTGATTAATGAACCTGTTGAAGGCAGTGAGGGGAATATACTGGGACAGCTGGCTGGGGCCATGCCACAGGCTGTGACTGTCACCCCTGAGGAGCGGCAGGCAATTGAACGTCTCGAAGCAATGGGTTTTGATCGTGCAACTGTGTTGGAGGTGTACTTCGCTTGTAACAAAAATGAGGAACTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTAATGATGAATAA 1185 0.47 MKIFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKTKSSSGEGSTTSTAPSAKIMQTSAPPASTSVSSAPQAPAATVATPPPVTAPAATPAAAPAPLSSGPAVAGSDIYGQAASNLVAGSNLEETIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVTRVPASGQPANPTAAPQAAQPTSVPSSGPNANPLDLFPQGLPNVGSGAAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGSEGNILGQLAGAMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFNDE* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1248 394 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 161 204 IPR015940 -
Apr7g1248 394 MobiDBLite consensus disorder prediction 212 247 - -
Apr7g1248 394 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 346 387 IPR015940 -
Apr7g1248 394 Gene3D - 341 388 - -
Apr7g1248 394 SUPERFAMILY UBA-like 160 215 IPR009060 GO:0005515
Apr7g1248 394 CDD UBA1_Rad23_plant 157 206 - -
Apr7g1248 394 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 393 - -
Apr7g1248 394 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Apr7g1248 394 Gene3D - 1 80 - -
Apr7g1248 394 TIGRFAM rad23: UV excision repair protein Rad23 1 391 IPR004806 GO:0006289
Apr7g1248 394 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Apr7g1248 394 Gene3D - 156 206 - -
Apr7g1248 394 PRINTS DNA repair protein Rad23 signature 294 316 IPR004806 GO:0006289
Apr7g1248 394 PRINTS DNA repair protein Rad23 signature 343 359 IPR004806 GO:0006289
Apr7g1248 394 PRINTS DNA repair protein Rad23 signature 360 374 IPR004806 GO:0006289
Apr7g1248 394 PRINTS DNA repair protein Rad23 signature 375 390 IPR004806 GO:0006289
Apr7g1248 394 SUPERFAMILY UBA-like 330 391 IPR009060 GO:0005515
Apr7g1248 394 SMART uba_6 163 203 IPR015940 -
Apr7g1248 394 SMART uba_6 349 386 IPR015940 -
Apr7g1248 394 MobiDBLite consensus disorder prediction 116 130 - -
Apr7g1248 394 MobiDBLite consensus disorder prediction 79 142 - -
Apr7g1248 394 MobiDBLite consensus disorder prediction 220 247 - -
Apr7g1248 394 SUPERFAMILY XPC-binding domain 264 330 IPR036353 GO:0003684|GO:0006289|GO:0043161
Apr7g1248 394 SMART CBM 266 309 IPR006636 -
Apr7g1248 394 SMART ubq_7 1 75 IPR000626 GO:0005515
Apr7g1248 394 MobiDBLite consensus disorder prediction 79 115 - -
Apr7g1248 394 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Apr7g1248 394 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 393 - -
Apr7g1248 394 Gene3D - 259 324 IPR036353 GO:0003684|GO:0006289|GO:0043161
Apr7g1248 394 CDD Ubl_Rad23 1 74 - -
Apr7g1248 394 Pfam UBA/TS-N domain 349 384 IPR015940 -
Apr7g1248 394 Pfam UBA/TS-N domain 163 201 IPR015940 -
Apr7g1248 394 Pfam XPC-binding domain 268 323 IPR015360 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1248 Apr-Chr7 19549522 19559305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1248 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.892 7.60e-10 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1248 7 19549522 19559305 Apr7g1248 7 19549522 19559305 ECH