Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1246 ATGCTGGAGCCTCTCAATCAATCAACTAAAAAGTTGAAGAAGCTCAAGCACAAGTGTAATCCATGTCATGAATCCAAGATGATAAGAAAATTGCGCATCATTTGGGAAGATCCTGATGCCACTGACCCTTCATCAGATGAAGATGAGGGCGTTGAGAACAGCAAGAAGATGAAGAGAACCGTGCGTGAGCTTCCTCTTCCACTTGTTTCAGTTGACACTGTCACTGCACATGAGGCTAGTGCTGAGAGCTCAAGCAATGATGGGTTGAACAAGATAGCCAAAACCCCATCAATGAAGAGGCAATCTTGTGGCAAATACAAAGGTGTTAGAATGAGAAAATGGGGCAAATGGGCTGCAGAGATTCGTGACCCTTTCAGAGGTGCACGTCTCTGGTTGGGCACTTTCAACACTGCAGAAGAGGCTTCCCAAGCCTATGAGACCAAAAGGCTTGAATTTGAAGCCATGGCCAAGGCTTTATCTGATGTGAAGAGCAACAAGAATAGCAACCACAATGATGTTGTTTCTGTTGAAAACATGGATGCCCAAGAAAAGAACAACACTTCCGACTATTGTGTTTCTTCTGGTGCAGCTTCTGTTTCAGACTCCAAGTCTGTTACTTTGGATGACTCAGAGAGTGGTGTATTGTCACATACATCACCATATTCTGAGCGGGAATTGGAGGCCTCTGCTTCCAATTTGATTCGCGGTGCCAAGATACTGAGCAATGAAGTTGTTGAGACCAGTGATCTGGTGGCTGAATTTGCAGAGCTGGAAATACCCGATTTGAGTGTGTTGAATGTGCCATCACCATCTGCTGATTGGTTGGTGTTTGACGGTTTTGAGCAGAGCTATGATGATGATCTTGGTGGCTTGGAGGACATTCAGATTTGTGGTTTTGATGACAATGGGCATAGTGAGCTTCCTGATTTCGATTTTGATGACTTTGGTGCTGATGAGTTTGCTGGTTGGATTGAAGAACCCCTCAATATACCATGCGTATAA 1002 0.4451 MLEPLNQSTKKLKKLKHKCNPCHESKMIRKLRIIWEDPDATDPSSDEDEGVENSKKMKRTVRELPLPLVSVDTVTAHEASAESSSNDGLNKIAKTPSMKRQSCGKYKGVRMRKWGKWAAEIRDPFRGARLWLGTFNTAEEASQAYETKRLEFEAMAKALSDVKSNKNSNHNDVVSVENMDAQEKNNTSDYCVSSGAASVSDSKSVTLDDSESGVLSHTSPYSERELEASASNLIRGAKILSNEVVETSDLVAEFAELEIPDLSVLNVPSPSADWLVFDGFEQSYDDDLGGLEDIQICGFDDNGHSELPDFDFDDFGADEFAGWIEEPLNIPCV* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1246 333 Pfam AP2 domain 105 154 IPR001471 GO:0003700|GO:0006355
Apr7g1246 333 MobiDBLite consensus disorder prediction 36 58 - -
Apr7g1246 333 CDD AP2 105 145 IPR001471 GO:0003700|GO:0006355
Apr7g1246 333 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 12 333 - -
Apr7g1246 333 SMART rav1_2 105 169 IPR001471 GO:0003700|GO:0006355
Apr7g1246 333 PIRSF PTI6 191 324 IPR017392 GO:0003700
Apr7g1246 333 PIRSF PTI6 5 217 IPR017392 GO:0003700
Apr7g1246 333 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 333 - -
Apr7g1246 333 SUPERFAMILY DNA-binding domain 105 152 IPR016177 GO:0003677
Apr7g1246 333 Gene3D AP2/ERF domain 104 159 IPR036955 GO:0003700|GO:0006355
Apr7g1246 333 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Apr7g1246 333 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Apr7g1246 333 ProSiteProfiles AP2/ERF domain profile. 105 163 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1246 Apr-Chr7 19515268 19517347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1246 23 332 AP2-EREBP Transcription Factor Family AT1G68550 37.812 5.00e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr7g1246 AP2 7.4e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1246 7 19515268 19517347 Apr7g1246 7 19515268 19517347 ECH