Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1243 ATGATTTTCACCAAGACCGAGGCAAACGCTGTTAGCGCCAAAACGGCAAGAGCGTGCGATTTCTGCGCCAGAAAGCGAGCATGTTGGTACTGTGCCGCCGACGATGCTTTCCTCTGCCAACACTGCGACTATTCCGTTCACACGGCTAACCCGTTAGCGCGTAGACATGGACGGGTTCGCTTGAAAACGACGTCGTTTAAGTCACTCAATAATATTAACTGTGCTCCGTCGTGGCACAAAGGATTCGCCAAGAAACCTCAGACGCCACGTGGAGACGGAAAGCACACTTTGAAGAACCCATTCGATGTGGTACCTGAAGTGGGTTACGATGATATGAATTCCCACGAAGAGGGCGTGGAACAGGTTCTTTATAGAGTGCCCGTTTGTGACAATAATCATGGTTTGTTTGTTTCATCGGAGATTGAAGTTGCTGAGTTTGATCCTGATGTTGAGATTTTGTTGGGTAAAGGAGTGGAGAATGAGTGCGTGGGAATGGAAGGGTTGGGGCTAGCTGATGGCAAAGAATATGAATATGAACATTCTTCGTGGGAGTGTTGTGAGGATAGTGGAAAAGTGAAGGTGGAGATGATGATGATGGGGACAGAGGAAGCATTTGAATTGGGATTTGATTGTGACGATGCTCCTTTAACATGTGAAGAGGTGAAGGAGAAGATTGGTTTGGATGAGATCAATAATGGTGGGGAACTCAAAGAGATTAATGACGAAGAAACGACAAAGAAGATACTATTGCTGCAGTTGGATTATGAAGCTGTAATCACTGCTTGGGCAACCCAAAAATCTCCGTGGACTTCTGCGGATAAACCACACTTGGTTTCGGATCACAGCATGAGAAGATGGGGAATGGAGCTTCACAGACCTTATGGTGCAGCAATGGAAGACGGGGGAAGAGAAGCGAGAGTATCACGATATAGAGAAAAGCGACGTACAAGGTTGTTCTCGAAGAAAATAAGGTATGAGGTTAGAAAATTGAATGCAGAGAAGAGACCCAGAATGAAAGGGAGGTTTGTAAAGACAGCTTCCTTTGTGGCAGTGCCACCACCAACTCTTCCTTTGCCAAACAAATAG 1086 0.4604 MIFTKTEANAVSAKTARACDFCARKRACWYCAADDAFLCQHCDYSVHTANPLARRHGRVRLKTTSFKSLNNINCAPSWHKGFAKKPQTPRGDGKHTLKNPFDVVPEVGYDDMNSHEEGVEQVLYRVPVCDNNHGLFVSSEIEVAEFDPDVEILLGKGVENECVGMEGLGLADGKEYEYEHSSWECCEDSGKVKVEMMMMGTEEAFELGFDCDDAPLTCEEVKEKIGLDEINNGGELKEINDEETTKKILLLQLDYEAVITAWATQKSPWTSADKPHLVSDHSMRRWGMELHRPYGAAMEDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKTASFVAVPPPTLPLPNK* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1243 361 CDD Bbox1_BBX-like 18 61 - -
Apr7g1243 361 ProSiteProfiles CCT domain profile. 303 345 IPR010402 GO:0005515
Apr7g1243 361 SMART bboxneu5 14 61 IPR000315 GO:0008270
Apr7g1243 361 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Apr7g1243 361 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 351 - -
Apr7g1243 361 Pfam CCT motif 303 345 IPR010402 GO:0005515
Apr7g1243 361 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Apr7g1243 361 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1243 Apr-Chr7 19480442 19482513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1243 5 344 C2C2-CO-like Transcription Factor Family AT1G25440 42.195 1.94e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Apr7g1243 CCT 2.7e-18 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1243 7 19480442 19482513 Apr7g1243 7 19480442 19482513 ECH