Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1229 ATGAACAAGGTGGAGAATTTTACCTTGACCGATCTAGGACTCATCATACCTTTCTCCAACAATGACAACCTTTTGGATCAACAACCACAGCTCCAAACCCTGCAGAACTTTAGTCATTCTGAGAATCACCCAAATCCTATTCCACTGATTTCTTCATCAGCCTCTGCCTATAGTGCCAAATATGATCATTCTTCTCCTGCAAATTCTGCAACTGATTGCGATGAAAAGAATAAGAATCTGGTTGGCAACAAAAGGAAGAGAAACTTTGACAGACTCAAAGAGAAAGGAAATGAAGTAATTCATGTAAGGGCAAAAAGAGGCCAAGCAACTGATAGCCACAGTTTAGCAGAAAGGGTGAGAAGAGAAAAAATCAATGAGAAGATGAGATATTTGCAGGAGTTGGTTCCAGGGTGCTATAAGTCAATGGGAATGGCAGTAATGTTAGATGTGATAATAGACTATGTTCAATCACTACAGCAGCAAATTGAGTTTCTATCTATGAAGCTTTCAGCAGCAAGCATGTATTTTGATTTCAGCACTGCAGAGATGGATGCTACTGAAATCATGCAGAGGAGTGCTAGCACACATGAAATACAAGAGATGGAAAGGGTAGCAGGAGAAGGTTTTGGTGGGATCAGCTATTCCAACCCAACATGGCCACTGTATTGA 669 0.4066 MNKVENFTLTDLGLIIPFSNNDNLLDQQPQLQTLQNFSHSENHPNPIPLISSSASAYSAKYDHSSPANSATDCDEKNKNLVGNKRKRNFDRLKEKGNEVIHVRAKRGQATDSHSLAERVRREKINEKMRYLQELVPGCYKSMGMAVMLDVIIDYVQSLQQQIEFLSMKLSAASMYFDFSTAEMDATEIMQRSASTHEIQEMERVAGEGFGGISYSNPTWPLY* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1229 222 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 32 208 IPR024097 GO:0006355
Apr7g1229 222 Gene3D - 105 176 IPR036638 GO:0046983
Apr7g1229 222 CDD bHLH_AtBPE_like 98 178 - -
Apr7g1229 222 SMART finulus 114 164 IPR011598 GO:0046983
Apr7g1229 222 PANTHER TRANSCRIPTION FACTOR BHLH75 32 208 - -
Apr7g1229 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 106 177 IPR036638 GO:0046983
Apr7g1229 222 Pfam Helix-loop-helix DNA-binding domain 112 159 IPR011598 GO:0046983
Apr7g1229 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 108 158 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1229 Apr-Chr7 19395019 19396368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1229 94 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 66.667 2.78e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr7g1229 HLH 3e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1229 7 19395019 19396368 Apr7g1229 7 19395019 19396368 ECH
Apr7g1229 7 19395019 19396368 Apr6g1058 6 15273265 15275040 ECH
Apr7g1229 7 19395019 19396368 Apr2g1458 2 20640219 20641660 ECH