Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1080 ATGCGAACGCTTTGTGACGCTTGTGAGAGTGCGGCCGCTATAGTTTTCTGCGCCGCTGATGAGGCTGCGCTGTGTCGTGCATGTGATGAGAAGGTTCACATGTGCAATAAGCTAGCTAGTAGGCATGTGAGAGTTGGTCTTGCAAGTCCAAGTGATGTGCCTCGCTGTGACATATGCGAGAATGCACCTGCTTTCTTCTATTGCGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTCGGAGGTAAAAGAACGCATGGACGATATCTTCTTTTCAGGCAGAGAGTTGAGTTTCCAGGAGATAAATCTAGTCATGCTGAAAATCCGGCGTCACAGCCACTGGAACCAGGAGAGGCTAAAAGAGGACAAACTCCACTTCCCAAACTAAAAATGGGAGAGAAGCAACAAAATCACAGGATGCCTCTGGTTTCAACGCCAGGACCTGATGCAGATGGGCATACCAAGATGGAAACTAAAATGATTGATTTGAACATGAAGCCAAACAGAATACATGAACAAGCATCAAATAATCAGCCATAA 555 0.4577 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHAENPASQPLEPGEAKRGQTPLPKLKMGEKQQNHRMPLVSTPGPDADGHTKMETKMIDLNMKPNRIHEQASNNQP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1080 184 CDD Bbox1_BBX-like 4 47 - -
Apr7g1080 184 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Apr7g1080 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
Apr7g1080 184 SMART bboxneu5 51 96 IPR000315 GO:0008270
Apr7g1080 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 183 - -
Apr7g1080 184 CDD Bbox1_BBX-like 56 96 - -
Apr7g1080 184 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 183 - -
Apr7g1080 184 MobiDBLite consensus disorder prediction 105 159 - -
Apr7g1080 184 Gene3D Classic Zinc Finger 2 91 - -
Apr7g1080 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Apr7g1080 184 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Apr7g1080 184 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Apr7g1080 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1080 Apr-Chr7 17768395 17771443 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Apr7g1080 zf-B_box 2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1080 7 17768395 17771443 Apr7g1080 7 17768395 17771443 ECH
Apr5g1797 5 21276117 21277140 Apr7g1080 7 17768395 17771443 ECH