Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0876 ATGGATCGCATCAAAGGCCCATGGAGCCCCGAAGAGGACGAGGCCCTCCAGAAGTTAGTTGAGAAACACGGGCCCAGAAACTGGTCCCTCATCAGCAAATCCATTCCCGGTCGTTCTGGCAAGTCCTGCCGCCTCCGGTGGTGCAACCAGCTCTCGCCCCAGGTGGAGCACCGAGCCTTCACGCCCGAAGAGGACGACACCATAATCCGCGCCCACGCGCGCTTCGGCAACAAGTGGGCCACAATCGCCCGCCTCCTCTCGGGCAGAACCGACAACGCCATCAAAAACCACTGGAACTCCACCTTAAAGCGCAAGTGCGCTTCCATGATGCTCGATGAGCCTCAACCTCTCAAAAGGTCGGTGAGTGCCGGCGCGGCTTTACCAATCTCCACGGGCCTCTGCATGAACCCGCCCACCCCTGGTAGCCCCTCTGGATCCGATGTGAGCGAGTCCAGCGTACCAGTTGCGTCCTCATCCCACGTGTACCGACCCGTGCCAAGGACCGGCGGGGTTCTACCTCCGGTAGAAACGACGTCGTCCTCCAATGACCCTCCAACTTCATTGTCCTTGTCTCTCCCCGGCGTCGACTCTTCCGAAGTCTCCAATCGGATAACTGAACCAATCCACGTCGCGCCGCCACCGTCCAATACTATCCCTTTGTTGCCTATAATGACTGCTCCGGTTCCGGTGGCGGTGCCGCAACAGTTTCAAGATACGTCGTCATTGAAGCCTTTTAATTTAAGTGCGGAGTTTCTGGCTGTGATGCAGGAAATGATAAGGAAGGAGGTGAGGAGTTATATGATGGGGTTGGAGCAGCAGAATGGGATGTGTTTTCAGGCTGCAGCTGATGGGTTTAGGAACGCTTCCGTGAAGCGTATTGGAATTAGCAGGATCGATTCGTAA 903 0.567 MDRIKGPWSPEEDEALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASMMLDEPQPLKRSVSAGAALPISTGLCMNPPTPGSPSGSDVSESSVPVASSSHVYRPVPRTGGVLPPVETTSSSNDPPTSLSLSLPGVDSSEVSNRITEPIHVAPPPSNTIPLLPIMTAPVPVAVPQQFQDTSSLKPFNLSAEFLAVMQEMIRKEVRSYMMGLEQQNGMCFQAAADGFRNASVKRIGISRIDS* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0876 300 Pfam Myb-like DNA-binding domain 59 101 IPR001005 -
Apr7g0876 300 Pfam Myb-like DNA-binding domain 5 51 IPR001005 -
Apr7g0876 300 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Apr7g0876 300 MobiDBLite consensus disorder prediction 135 158 - -
Apr7g0876 300 CDD SANT 7 49 IPR001005 -
Apr7g0876 300 Gene3D - 58 121 - -
Apr7g0876 300 Gene3D - 4 56 - -
Apr7g0876 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Apr7g0876 300 CDD SANT 59 102 IPR001005 -
Apr7g0876 300 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Apr7g0876 300 MobiDBLite consensus disorder prediction 132 199 - -
Apr7g0876 300 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 2 259 - -
Apr7g0876 300 PANTHER MYB PROTEIN-RELATED 2 259 - -
Apr7g0876 300 SMART sant 56 104 IPR001005 -
Apr7g0876 300 SMART sant 4 53 IPR001005 -
Apr7g0876 300 MobiDBLite consensus disorder prediction 173 199 - -
Apr7g0876 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Apr7g0876 300 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0876 Apr-Chr7 15795028 15797167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0876 1 299 MYB Transcription Factor Family AT4G37260 51.506 1.03e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr7g0876 Myb_DNA-bind_6 9.3e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0105 3 1838531 1839759 Apr7g0876 7 15795028 15797167 ECH
Apr9g0390 9 5287413 5288667 Apr7g0876 7 15795028 15797167 ECH
Apr5g1490 5 18865251 18866650 Apr7g0876 7 15795028 15797167 ECH
Apr7g0876 7 15795028 15797167 Apr7g0876 7 15795028 15797167 ECH
Apr3g0105 3 1838531 1839759 Apr7g0876 7 15795028 15797167 PCT