Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0006 ATGGCTTTGGAGGCTGTGAATTGTGGTAGCGCCATGACGTACGAGGAAGACGAGGTTGTTGAAGCATGGGCGAAGGGGAAACGTTCTAAGTCCTCTAAACGACCAACAGAGGAAGAGTACATGGCTCTTTGCCTCGTCATGCTGGCTCACGATCACAATCACAGTCACAGTCACAATCACAGGTGCACTCTCTGCAACAAAGCCTTCCGCTCTTACCAAGCACTCGGAGGGCACAAGGCCAGCCACCGCAAACCCTCTTCCGACAAAGCCACCACCGCCCGAATAAGAATGCACCAATGCTCCATCTGTCACAAGGCTTTCCCCACCGGTCAGGCTTTGGGTGGCCACAAACGCTGCCACTATGAGACTCAGACCCACCTTCCTTTTGACTTGAATTTGCCGCCACCCAAGAAGCCAAGTTTGCTTTTCGGTGCACCACAGTGA 444 0.5338 MALEAVNCGSAMTYEEDEVVEAWAKGKRSKSSKRPTEEEYMALCLVMLAHDHNHSHSHNHRCTLCNKAFRSYQALGGHKASHRKPSSDKATTARIRMHQCSICHKAFPTGQALGGHKRCHYETQTHLPFDLNLPPPKKPSLLFGAPQ* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0006 147 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Apr7g0006 147 SUPERFAMILY beta-beta-alpha zinc fingers 96 124 IPR036236 -
Apr7g0006 147 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Apr7g0006 147 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 124 IPR044653 GO:0003700
Apr7g0006 147 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Apr7g0006 147 Pfam C2H2-type zinc finger 60 85 - -
Apr7g0006 147 Pfam C2H2-type zinc finger 98 122 - -
Apr7g0006 147 PANTHER ZINC FINGER PROTEIN ZAT10 1 124 - -
Apr7g0006 147 SMART c2h2final6 98 120 IPR013087 -
Apr7g0006 147 SMART c2h2final6 60 82 IPR013087 -
Apr7g0006 147 Gene3D Classic Zinc Finger 57 120 - -
Apr7g0006 147 SUPERFAMILY beta-beta-alpha zinc fingers 58 84 IPR036236 -
Apr7g0006 147 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0006 Apr-Chr7 541471 541935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0006 1 144 C2H2 Transcription Factor Family AT1G27730 37.255 1.99e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr7g0006 zf-C2H2_6 5.3e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0006 7 541471 541935 Apr7g0006 7 541471 541935 ECH
Apr8g2416 8 34354766 34356214 Apr7g0006 7 541471 541935 ECH
Apr9g0372 9 5004783 5006232 Apr7g0006 7 541471 541935 ECH
Apr5g1467 5 18708294 18710446 Apr7g0006 7 541471 541935 ECH