Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1058 ATGGCTGAATTCACAGAAAATTTGCAAAGCATTAGACCTTGCTCTTTTCCATTCTTAGATATTGATCCAAGCATGGAACTCCTTAACCAATTCATAGGCATCAACCAACATGTTCTAGACAACTCAAACTCGAATATGCATAACTTGATGGCTTTCTCCTGTGACAGCTTCTTGGGCCCTCAACAAGAACCTGGGTTTCCAGCAAACTTGGAAGAAAATTTTCCTGGTCTTGTCCATCATGTCAATCACAACAATACTGTTCCTGTTTCCCTCCCTATTTTCCCTTCACAAAATGAGATCCATGAAGGTAAAAAGAGGAAAACAACCGATACTCTTGAGACAAGTTCAGCAAACTCTACTCCTGCAGTTTCTGAGAGTGGAAGCAAGATCAAACATATTTCTGGAAGAGGGAAGAGGGCAAAAAGCAATGTAACAGAAGAAGAAAAAGTAAAGGAAGTGGTTCATGTTAGAGCCAGAAGAGGTCAAGCCACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAAAAATTAAGGTGCTTACAGAATATTGTTCCAGGGTGTTACAAGACCATGGGCATGGCAGTAATGTTGGATGAGATCATAAACTATGTCCAATCTTTGCAGCATCAAGTAGAGTTCCTTTCTTTGAAGCTCACTGCAGCAAGTACCTTTTATGACTTCAATTCCGAAGCAGATGCTTTAGAAACAATGCAGAGAGCAAAGGCATCCGAGGCAAAAGAGTTAGCCAAGTATAAGAAAGAAGGATATGGAGGAGTTTCTTGTTTTCAATCAAATTGGTCCCTTTGA 822 0.4015 MAEFTENLQSIRPCSFPFLDIDPSMELLNQFIGINQHVLDNSNSNMHNLMAFSCDSFLGPQQEPGFPANLEENFPGLVHHVNHNNTVPVSLPIFPSQNEIHEGKKRKTTDTLETSSANSTPAVSESGSKIKHISGRGKRAKSNVTEEEKVKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTFYDFNSEADALETMQRAKASEAKELAKYKKEGYGGVSCFQSNWSL* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1058 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Apr6g1058 273 MobiDBLite consensus disorder prediction 112 127 - -
Apr6g1058 273 SMART finulus 168 218 IPR011598 GO:0046983
Apr6g1058 273 CDD bHLH_AtBPE_like 152 237 - -
Apr6g1058 273 Coils Coil 239 259 - -
Apr6g1058 273 MobiDBLite consensus disorder prediction 102 148 - -
Apr6g1058 273 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
Apr6g1058 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 228 IPR036638 GO:0046983
Apr6g1058 273 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 272 IPR024097 GO:0006355
Apr6g1058 273 Gene3D - 162 224 IPR036638 GO:0046983
Apr6g1058 273 PANTHER TRANSCRIPTION FACTOR BEE 1 2 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1058 Apr-Chr6 15273265 15275040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1058 111 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 68.072 5.04e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr6g1058 HLH 0.00018 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1058 6 15273265 15275040 Apr2g1458 2 20640219 20641660 ECH
Apr7g1229 7 19395019 19396368 Apr6g1058 6 15273265 15275040 ECH
Apr6g1058 6 15273265 15275040 Apr6g1058 6 15273265 15275040 ECH