Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0519 ATGAGTAGTGAAGGGGACATGTCTGATAAGGATCCGGGTATTAGGCTCTTTGGCAGGAAGATTTCGTTACCGGAATCTCAGATTCCGGCGAGTTCTCAGATGGGGTGTCAGATTCAGGCCAACTTTGCAACCATGAATGCTTGCAGTGGCTTAAAGAAAACAGAAGTTGAAATGCCGTGTACTGAAAACTCTCAGCAACCAGAGCATTCTTCTGATTTAAGGGATAGCAGACAAGAGTCCCTACATAATGGAAAGGAAAATGAGTCAAAAGTAAATACCAAGCCTGTGGAAGATAACATGGACAATAGCAGTACAGATCAAGATAAAATCTTTAAGAAACCAGACAAGATTCTTCACTGTCCACGATGCAACAGTCTGGACACTAAATTCTGTTATTTCAATAACTACAATGTTAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACCGCGGGTGGAACAATGAGAAATGTTCCCGTGGGTGCCGGGAGACGGAAGAACAAGCACCTAGCTTCTCAATACCGGCACATTATTGTAGCTTCTGATGGAATTCCGTCTACAAGGTTAGAAACCAAAGACTCATCTAGTCACCAACTTGTCTCAACTCTTGAATCTGCTGCTGTTTTCAGGTCTTCAACAGATAATGGTACTGTATTGAAATTTGGTCCAGATACACCTCTCTGCGAATCTATGGAGTCAATGCTTAATCTTAAAGACCAGAAAAGAAGTGTTGACGCAAACTCTAACAACATTGCAGAAAATGGGGAGGACGAAGTATCCTTATGTGGATCATCTGTGACAAATGCTTGTAATCCAAGAAATGAACTTCCAGAACATAATGCATCAAAACCTTTGCAGTGTTACCCTGTTCCTCCTTGGATATTCCCTTGGAATCCAGGTTGGAACAATGTTGCTTCTGCAGCAGCAGTTCAGCCATCCTCACTTCACATGTGTAACCCTTATAGCGCTGACCACGCTTCAATGCAGTGGTGTCCCACGCCGATGGTGGCCGTCCCAACCATTTGCCCACCGAGCTTTCCTTTGCCATTTGTTCCTGGATCATGCTGGAGTGGACCACCTATGTGGGGTGCTTCTGGAACAGGAACAGTTTCAATAGGTTTCAATGGTTGCCTTTCACCTTCTTCCTCTACTAGTAACAGCTTCTGCTCAGGAAATGGCTCCCCAACGCTTGGCAAACACACACGAGACAAGTTTTTCACAGATGAAGAGAAATCAGACATGTATGTTTTGGTTCCAAAGACCCTTAGAATTGATGATCCAATTGAGGCCTCAAAAAGTCCTATATGGGCTACCTTAGGAATCAAACCTGATAACCATCAATCTCTATCAGAAGATGCTATTTCCAAAAAGGAAAAGCCTAAAGAAGGCAAAGACCGTGTGATGGGTGTGTCTCAAATCTTGCAGGCTAACCCTGCAGCTATTTCTCGTGCTCATGCATTCCAAGAGAGCATATAA 1485 0.437 MSSEGDMSDKDPGIRLFGRKISLPESQIPASSQMGCQIQANFATMNACSGLKKTEVEMPCTENSQQPEHSSDLRDSRQESLHNGKENESKVNTKPVEDNMDNSSTDQDKIFKKPDKILHCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRHIIVASDGIPSTRLETKDSSSHQLVSTLESAAVFRSSTDNGTVLKFGPDTPLCESMESMLNLKDQKRSVDANSNNIAENGEDEVSLCGSSVTNACNPRNELPEHNASKPLQCYPVPPWIFPWNPGWNNVASAAAVQPSSLHMCNPYSADHASMQWCPTPMVAVPTICPPSFPLPFVPGSCWSGPPMWGASGTGTVSIGFNGCLSPSSSTSNSFCSGNGSPTLGKHTRDKFFTDEEKSDMYVLVPKTLRIDDPIEASKSPIWATLGIKPDNHQSLSEDAISKKEKPKEGKDRVMGVSQILQANPAAISRAHAFQESI* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0519 494 PANTHER CYCLIC DOF FACTOR 2 7 493 IPR045174 GO:0003700|GO:0006355
Apr6g0519 494 Pfam Dof domain, zinc finger 115 172 IPR003851 GO:0003677|GO:0006355
Apr6g0519 494 PANTHER CYCLIC DOF FACTOR 3-LIKE 7 493 - -
Apr6g0519 494 MobiDBLite consensus disorder prediction 68 108 - -
Apr6g0519 494 ProSitePatterns Zinc finger Dof-type signature. 120 156 IPR003851 GO:0003677|GO:0006355
Apr6g0519 494 MobiDBLite consensus disorder prediction 59 108 - -
Apr6g0519 494 ProSiteProfiles Zinc finger Dof-type profile. 118 172 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0519 Apr-Chr6 6487171 6490184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0519 11 493 C2C2-Dof Transcription Factor Family AT5G39660 36.210 1.36e-69 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr6g0519 zf-Dof 5.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0519 - - ccaj:109792807 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0519 6 6487171 6490184 Apr6g0519 6 6487171 6490184 ECH