Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0285 ATGGGTAGGGGAAGAGTGGAACTGAAAAGGATAGAGAACAAGATAAACAGGCAAGTAACATTTGCAAAGAGGAGAAATGGCCTTCTCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAAGTTGCCCTTATCATCTTTTCTAACCGTGGCAAGCTTTATGAGTTTTGTAGCAGCTCTAGCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGCCAAAGAGCTTGAGAGCAGCTACCGAGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACCCAGAGAAACCTTCTAGGTGAAGACCTGGGCCCATTAAATACCAAAGAGCTTGAGCAGCTTGAGCGGCAACTGGATTCATCTCTCAAGCAAGTGAGGTCCACAAAGACTCAATTCATGCTGGACCAGTTAGCTGATCTTCAAAATAAGGAGCAGATGTTGGTAGAAGCAAACAGAGCTTTGACCATGAAGCTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGTGATCAAAGTATGCCATATGGTACACAGAATGCTCACTCTCAAGGTTTCTTCCAGCCTTTAGAGTGCAACCCCACATTGCAGATAGGCCCTGACTACAGGTACAACCCTGAAGCCTCAGATCAGCTAACTACCACAACTCAAGCTCAACAAGTGAATGGTTTTATTCCTGGATGGATGCTTTGA 744 0.4435 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRALTMKLEEINSRNQYRQTWEAGDQSMPYGTQNAHSQGFFQPLECNPTLQIGPDYRYNPEASDQLTTTTQAQQVNGFIPGWML* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0285 247 PANTHER MADS BOX PROTEIN 1 234 - -
Apr6g0285 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr6g0285 247 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr6g0285 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr6g0285 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr6g0285 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr6g0285 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Apr6g0285 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr6g0285 247 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 234 - -
Apr6g0285 247 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Apr6g0285 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr6g0285 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr6g0285 247 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr6g0285 247 Coils Coil 124 144 - -
Apr6g0285 247 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Apr6g0285 247 Coils Coil 153 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0285 Apr-Chr6 2923105 2928826 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr6g0285 K-box 6.7e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0285 6 2923105 2928826 Apr9g2936 9 36213519 36219329 ECH
Apr6g0285 6 2923105 2928826 Apr6g0285 6 2923105 2928826 ECH
Apr4g2560 4 34416667 34421682 Apr6g0285 6 2923105 2928826 ECH
Apr7g1379 7 20877962 20889457 Apr6g0285 6 2923105 2928826 ECH
Apr6g0285 6 2923105 2928826 Apr4g2560 4 34416667 34421682 PCT