Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0205 ATGTTGGAAGCGAAAGACCCGGCGATCAAGCTCTTCGGGAAGACGATCCCGGTGCCGGAGATCCCTGCCGGATCCGGAGACTCTGCTGGAGCTCCGGCTTCGTCTTCTGGTGATGGTGTTGATGTTGATGACGATGGTGCTGGTCAGAACCGTGATTCTTCCGGCAACTCTTCTGATGCTAACAGGGATGGTGAAGAGCGCGAGATTGAACAGGACACAATTGGAGAGGAACCAACTGAGACTAAGAAGGAAGATGCGCCCCCCATCCAATCATCATCAGAAGTAACCAATATAGATACTGTCTCAAAATCAGGGGAAGAGTCTATTGACCCCTCCACTGGGAAGGAGACTGTTACATTGAAAACTTCAAAAAAGAATGAAGAACAGGGTGAAAATTCTCCAGATAAGACCCTGAAAAAGCCTGACAAAATACTGCCATGCCCACGCTGCAATAGCATGGATACCAAGTTCTGCTACTACAATAATTACAATGTCAACCAACCCCGACATTTCTGCAAGAAATGCCAGAGATACTGGACTGCTGGTGGAGCCATGAGGAACGTGCCTGTGGGTGCCGGTCGCAGGAAGAACAAGAACTCTTCTTCTCAGTATCGTCAAATTACCGTCCCTGAAGCATCACTCCAGAATCCTCAGCCAGACTTGCCAAATGGAGTTCATAATCCTTCCTTGAATTGTAATCCCACAGTCCTTGCAATTGGATCTGATACACCCTTGTGTGAATCAATGGCATCTGTTTTGAACCTTGCTGATAAAGGCACAAACAATTGCACAAGAAATGGATTTAACAGACCAAAAGAAATAGGAATTCCTGTTCCATATTTTGGCGGAGAAAAAGGAAATGATGGTTCCAATAAATCTTCTGATACATCAACAAAGCCAATGGAAGGTGAAACCACCAATAGGTCCCAAGAACAAGTTATACAGAATTGCCATACGTTCCCACCTCACGTTCCCTACTTCCCTGGTGCCCCTTGGCCTTTCCCATGGAATCCAGCACAGTGGAGCTCTCCTGTATCACCACCTGCCTTTTTCCCACCAGGATTTACTGTGCCACTCTATCCTGCAGCAGCTTATTGGGGTTTTACTGTACCAGGTGCATGGAACGTCCCATGGCTAGCACAACCATCATCACCAAATAATACAGTCCCTAACTCTGGTCCTAACTCCCCAACCTTGGGTAAACATTCTAGGGAAGAAAACATGCTCAAATCAAACGACACAGCCGGTGAGGATGAACATGGTGAGGGAAATAATAAAGAGAAGAGTCTTTGGGTTCCAAAAACATTGAGGATTGATGACCTAGGGGAAGCAGCAAAAAGCTCTATCTGGACAACTCTTGGGATTAAAAATAGTAAAGCAGACTCAGTTCCTGGGGAAGGACTCTTTAAAGCATTTCCATCAAAGGGTAGCGAAAAAAATCACGTTACACAAAGCTCACCGGTCTTGCAGGCCAACCCAGCAGCATTGTCTAGGTCAATTAACTTCCATGAGACCTCGTAG 1521 0.4622 MLEAKDPAIKLFGKTIPVPEIPAGSGDSAGAPASSSGDGVDVDDDGAGQNRDSSGNSSDANRDGEEREIEQDTIGEEPTETKKEDAPPIQSSSEVTNIDTVSKSGEESIDPSTGKETVTLKTSKKNEEQGENSPDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGAMRNVPVGAGRRKNKNSSSQYRQITVPEASLQNPQPDLPNGVHNPSLNCNPTVLAIGSDTPLCESMASVLNLADKGTNNCTRNGFNRPKEIGIPVPYFGGEKGNDGSNKSSDTSTKPMEGETTNRSQEQVIQNCHTFPPHVPYFPGAPWPFPWNPAQWSSPVSPPAFFPPGFTVPLYPAAAYWGFTVPGAWNVPWLAQPSSPNNTVPNSGPNSPTLGKHSREENMLKSNDTAGEDEHGEGNNKEKSLWVPKTLRIDDLGEAAKSSIWTTLGIKNSKADSVPGEGLFKAFPSKGSEKNHVTQSSPVLQANPAALSRSINFHETS* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0205 506 MobiDBLite consensus disorder prediction 85 119 - -
Apr6g0205 506 MobiDBLite consensus disorder prediction 287 311 - -
Apr6g0205 506 MobiDBLite consensus disorder prediction 471 506 - -
Apr6g0205 506 ProSiteProfiles Zinc finger Dof-type profile. 145 199 IPR003851 GO:0003677|GO:0006355
Apr6g0205 506 MobiDBLite consensus disorder prediction 58 84 - -
Apr6g0205 506 MobiDBLite consensus disorder prediction 477 506 - -
Apr6g0205 506 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 505 - -
Apr6g0205 506 MobiDBLite consensus disorder prediction 1 145 - -
Apr6g0205 506 ProSitePatterns Zinc finger Dof-type signature. 147 183 IPR003851 GO:0003677|GO:0006355
Apr6g0205 506 MobiDBLite consensus disorder prediction 280 311 - -
Apr6g0205 506 PANTHER CYCLIC DOF FACTOR 2 1 505 IPR045174 GO:0003700|GO:0006355
Apr6g0205 506 MobiDBLite consensus disorder prediction 120 143 - -
Apr6g0205 506 Pfam Dof domain, zinc finger 142 199 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0205 Apr-Chr6 2161650 2165125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0205 6 506 C2C2-Dof Transcription Factor Family AT5G39660 43.403 1.31e-104 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr6g0205 zf-Dof 6.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0205 - - gmx:100775675 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0205 6 2161650 2165125 Apr1g0926 1 13036060 13039435 ECH
Apr6g0205 6 2161650 2165125 Apr9g2996 9 36823350 36827671 ECH
Apr6g0205 6 2161650 2165125 Apr6g0205 6 2161650 2165125 ECH
Apr7g1501 7 22195186 22199330 Apr6g0205 6 2161650 2165125 ECH
Apr3g0924 3 24073471 24077137 Apr6g0205 6 2161650 2165125 ECH