Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1797 ATGAAGATCCAATGTGATGTGTGTGAAAAAGTTGAGGCCACTGTGTTCTGTCCTGCAGATGAAGCAGCTCTTTGCCATAGCTGCGATCGTATCATTCACCACGCCAACAAGCTCGCAACCAAACACGCTCGCTTCTCTCTCCATTACCCCACCTCCAAAGACTTCCCTCTTTGTGATATATGTCAAGAGAGACGTGCATATCTATTTTGCCAAGAAGATAGAGCGTTACTATGCAGAGAATGTGACCTTCCTATACACAGAGCCAACGAACATACCCAAAAGCATAACAGGTTTCTTCTAACGGGTGTGAAGCTCTCTGGCACTTCTTTGGACCCTGCTTCTTCATCCAACAATTGCCCTGAAGCGAGAAACCCTTCATCTAAGATGAACAGACCCAGATCAGTTTCCAATGAAAATGCGAGTTCTTCTTGCAAGGTTGAAGACAACGTGGCTAGTGACACGGGTTCGGTTTCTACTAGCAGCATTTCTGAATACTTGATTGAAACAATACCTGGTTACTGTTTCGAAGACCTCCTTGATGCTTCATTTGCTCCTAATGGTTTCTGTAAGAATTATTATGATAATCGTTCGGCGTTTCAGGACCAAGATCTTGAAGTTAGCACGTGTTTATTTCCGTTGGCAACGTGGGTACCCCAGGCTCAAGTTCAGTCACCTCAACTTAGCACTCCGAGTATTACCCAGATTGGAGTTAGGGAGATTCCAAGAGCCAACACTGTCAAATGGAGACATTATGGCTGTACAGTTCCTGAAACTAGTCAACAATTGATCAAAAGATCTAGAATTTCTCGATAA 813 0.4391 MKIQCDVCEKVEATVFCPADEAALCHSCDRIIHHANKLATKHARFSLHYPTSKDFPLCDICQERRAYLFCQEDRALLCRECDLPIHRANEHTQKHNRFLLTGVKLSGTSLDPASSSNNCPEARNPSSKMNRPRSVSNENASSSCKVEDNVASDTGSVSTSSISEYLIETIPGYCFEDLLDASFAPNGFCKNYYDNRSAFQDQDLEVSTCLFPLATWVPQAQVQSPQLSTPSITQIGVREIPRANTVKWRHYGCTVPETSQQLIKRSRISR* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1797 270 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Apr5g1797 270 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Apr5g1797 270 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 202 - -
Apr5g1797 270 SMART bboxneu5 53 100 IPR000315 GO:0008270
Apr5g1797 270 SMART bboxneu5 4 47 IPR000315 GO:0008270
Apr5g1797 270 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Apr5g1797 270 MobiDBLite consensus disorder prediction 109 154 - -
Apr5g1797 270 CDD Bbox1_BBX-like 57 100 - -
Apr5g1797 270 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 202 - -
Apr5g1797 270 CDD Bbox1_BBX-like 5 47 - -
Apr5g1797 270 Gene3D Classic Zinc Finger 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1797 Apr-Chr5 21276117 21277140 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr5g1797 zf-B_box 5.5e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1797 5 21276117 21277140 Apr5g1797 5 21276117 21277140 ECH
Apr5g1797 5 21276117 21277140 Apr7g1080 7 17768395 17771443 ECH
Apr9g0553 9 7826169 7827456 Apr5g1797 5 21276117 21277140 PCT