Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1796 ATGCAAGGGCAAGAAGAAGTGGTACTAAGGGGTTCAAAGTGCCAAGACTGTGGGAACCAAGCCAAGAAGGAATGCTCATACTCTAGGTGTAGGACTTGCTGCAAGAATAAAGGGTTTGAGTGCCCAACCCATATCAAGAGCACTTGGACTCCTGTGGATAGGAGGCGCCAGAGGGAGCAGCTACAACCTTCTCCCCCTACTTATCAAGGAGAGATTCCTCAAAAGCACAAGCAGATCAACCCATATTCAGCTAGTTTCGAGTTCAAATTTCCAGCTGCTATGAATTCCATGGCTATATTTCGGTGCGTTCAGGTTCGTTCTATGGATGATGCGGTTAATGAAATCGCATATCAAACATCTGTGAACATTGGAGGACATTTATTTAGTGGTCTTCTATATGATCAAGGTCCTGAACAAAGCTATCATAGGGGTGACAGTTCCAAGGGTCTTGTTGATCAGCAGCAGAATCTTGATCTTACCAATGCTTCAGTCCACACTAGAGATAGTGGTGCAACTACTACTATGGCCTCCACTGCTCATGATGAGCCTTTGTTTACTGCACCACCATATCCATTTCCCCTTGCTCCTTTCAGGCCCGGTATGCCATATTTCTCATACCCAAAACCATAG 630 0.454 MQGQEEVVLRGSKCQDCGNQAKKECSYSRCRTCCKNKGFECPTHIKSTWTPVDRRRQREQLQPSPPTYQGEIPQKHKQINPYSASFEFKFPAAMNSMAIFRCVQVRSMDDAVNEIAYQTSVNIGGHLFSGLLYDQGPEQSYHRGDSSKGLVDQQQNLDLTNASVHTRDSGATTTMASTAHDEPLFTAPPYPFPLAPFRPGMPYFSYPKP* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1796 209 MobiDBLite consensus disorder prediction 52 73 - -
Apr5g1796 209 Pfam Domain of unknown function (DUF702) 11 138 - -
Apr5g1796 209 PANTHER BNAC01G23660D PROTEIN 4 194 - -
Apr5g1796 209 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 13 55 IPR006510 -
Apr5g1796 209 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 4 194 IPR007818 GO:0003700|GO:0006355
Apr5g1796 209 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 89 137 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1796 Apr-Chr5 21264705 21265657 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Apr5g1796 DUF702 4e-44 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1796 5 21264705 21265657 Apr5g1796 5 21264705 21265657 ECH
Apr9g0552 9 7794307 7795838 Apr5g1796 5 21264705 21265657 ECH
Apr5g1626 5 19904891 19906321 Apr5g1796 5 21264705 21265657 ECH
Apr9g0552 9 7794307 7795838 Apr5g1796 5 21264705 21265657 PCT