Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1730 ATGGATCTGTTTTGGGTTGTTTGGGGGGTGACGGTGCTCGCGTGTATGGGAGTATCGGTCCATCCGTGTGCGGCTGTTGCAAACGTGTCATCCACGAGACCCACTGTTGTGAACATTGGAGCAATCTTCAACTTCGATTCCGTAATTGGGAAAGTTGCTAAAATTGCATTGGAGGAAGCGGTGAAGGATGTGAACGCCAATACCAGCATTCTACATGGAACTAAACTTGCTCTCACTCTGCAAAATTCTAATTGCAGTGGTTTCATAGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTGGTTGCTATAATAGGGCCACAATCTTCTGTAGTTGCCCACATAATATCCCATGTTGCAAATGAGCTTCGGGTTCCTCTATTGTCGTTTGCAGCAACAGACCCTACTCTCTCGTCGCTGCAGTTCCCGTTCTTTGTGAGGACAACGCAGAGTGATTTGTACCAAATGAGGGCAGTTGCTGAAATAATTGATTATTATGGTTGGAAGGAGGTTATTGCACTCTACGTTGATGATGATTATGGAAGAAACGGTGTGTCTGCATTAGATGATGAACTAGCTGCCAGGCGCTGTAAAATATCCTACAAGGAAGGAATCAACTCTGGGCCTCAGGTTGACCGCGGCGAAATCACGAATTTGCTTGTGAAGGTGGCACTGATGCAGTCTCGGGTCATTGTTCTTCATGCACATGCCAATTCTGGGTTTACGGTTTTCAATGTGGCACGCTATCTTGGGATGACAGATAGTGGTTATGTGTGGATAGCCACTGACTGGCTCTCTTCAGTTCTGGATTCTGTTTCTCTCCCTTCGGAGACAATGAATGTTTTGCAGGGAGTGCTTGTTTTGCGCCAGCACACCCCTGATTCGGATAGAAAAAGGGCATTTTTCTCTAGGTGGAACAAGTTAACTGGTGGCTCTTTGGGGTTACATTCTTATGGCCTCTATGCTTATGATTCTGTTTGGTTGGTTGCACGTGCTATTGATGCATTTTTCATGCAGGGTGGGATTGTTTCTTGTACCAATTACACAAGTTTAAGAAATGATAGGGGTGGTGGTCTTAACCTTGATGCAATGAGCATTTTTGATAATGGAACGCTTCTGTTGAAGAACATATTGCAGAGTGATTTTGTTGGGTTAACTGGTCAAATGAAATTTGAACCGGATCGATCTCTTGTTCATCCTGCCTTTGACATAATTAATGTGGTTGGCACTGGCATTCGTAGGGTTGGTTACTGGTCCAGCTACTCTGGTCTGTCAATTATATCTCCTGAGATATTATATGCAAAGCCACCTAATAGATCAACTGCAAATCAGCATCTTCACAGTGTGATATGGCCTGGAGATACATTATCTAAACCCCGCGGATGGGTATTCCCAAATAATGGCAGACAACTTAGAATTGGTGTGCCTATTCGAGTTGGTTTCAAAGAATTTGTCGCACCAGTGCAGGGAACAGAGATGTTTAAAGGTTTTTGTGTTGATGTATTTACAGCAGCAGTAAACTTGTTGCCATATGCTGTTCCTTACAGCTTTGTCCCCTTTGGAGATGGCCACAAAAATCCAAGCTACACAGAACTTGTCAACTTGATCACAACTGGTTACTTTGATGGTGCCATTGGTGACATTGCTATTGTCACAAATCGGACAAGGATTGTAGATTTTACACAACCATATGCTGCATCTGGACTTGTTGTGGTAGCTCCTTTCAAGAAAATTAATTCTGGCGGTTGGTCTTTCCTTCAGCCATTTACTCCTCTTATGTGGGCTGTGACTGCTTGTTTCTTCTTTTTCATTGGGCTAGTTGTATGGATTCTGGAGCACAGGATAAATGATGAATTCAGGGGTCCACCTAAACAACAAATCATAACCATGTTATGGTTTAGCCTGTCAACTCTATTTTTTTCCCACAGAGAGAATACCATGAGTTCTCTTGGTCGCTTGGTGGTACTCATATGGTTGTTTGTAGTTTTGATCCTCACTTCCAGCTACACTGCAAGTTTAACATCCATACTCACAGTGCAGCAGTTATCTTCCCCTATCAATGGAATAGATAGCTTAAAAGCTAGTGATGAACCTATAGGGTTCCAAGTGGGTTCATTCGCAGAACATTACTTGATTGAAGATATCGGAATATCCAAATCTAGGCTTGTTCCTCTTGGATCTCCAGAAGAGTATGCTAACGCACTCCAGCGTGGTCCTAAAAACGGAGGTGTTGCTGCTATTGTGGATGAACGGCCCTATGTTGAGATCTTCTTATCAACCCAGTGCACATTCAGGATTGTAGGTCAGGAGTTCACCAGAAGTGGCTGGGGTTTTGCATTCCCTCGGGACTCCCCTTTGGCTGTGGACATGTCAACTGCCATTCTACAACTTTCTGAAACTGGTGATCTACAGCGGATTCATGATAAGTGGATGACACAAAGCACCTGTAGTTTAGACAATACTGAAATTGATTCAGATCGTCTTCAGCTCAAAAGCTTCTGGGGTCTCTTTCTCATTTGCGGGATAGCTTGCTTTATTGCTCTTGTATTACACTTTTTGCAGATTATGTTCCAGTTATGGCGTTCTGCTCCTTCTGAACCTGCTTCCAATGCTAGCACAATTTCTGGTCATTTTCAAAGATTTCTTTCGCTCATTGACGAGAAGGAAAATTCATCACGGAGTGGAAGAAGGAAAAGGAATGGAGAAGAAAGATCGCTTGAAGACCAACTGGGAAGGCAGTCAAAGAGGATACAAACAGAAACAAGTGCGGCGTTCAACTCAAACAATTAA 2793 0.4347 MDLFWVVWGVTVLACMGVSVHPCAAVANVSSTRPTVVNIGAIFNFDSVIGKVAKIALEEAVKDVNANTSILHGTKLALTLQNSNCSGFIGMVQALRFMETDVVAIIGPQSSVVAHIISHVANELRVPLLSFAATDPTLSSLQFPFFVRTTQSDLYQMRAVAEIIDYYGWKEVIALYVDDDYGRNGVSALDDELAARRCKISYKEGINSGPQVDRGEITNLLVKVALMQSRVIVLHAHANSGFTVFNVARYLGMTDSGYVWIATDWLSSVLDSVSLPSETMNVLQGVLVLRQHTPDSDRKRAFFSRWNKLTGGSLGLHSYGLYAYDSVWLVARAIDAFFMQGGIVSCTNYTSLRNDRGGGLNLDAMSIFDNGTLLLKNILQSDFVGLTGQMKFEPDRSLVHPAFDIINVVGTGIRRVGYWSSYSGLSIISPEILYAKPPNRSTANQHLHSVIWPGDTLSKPRGWVFPNNGRQLRIGVPIRVGFKEFVAPVQGTEMFKGFCVDVFTAAVNLLPYAVPYSFVPFGDGHKNPSYTELVNLITTGYFDGAIGDIAIVTNRTRIVDFTQPYAASGLVVVAPFKKINSGGWSFLQPFTPLMWAVTACFFFFIGLVVWILEHRINDEFRGPPKQQIITMLWFSLSTLFFSHRENTMSSLGRLVVLIWLFVVLILTSSYTASLTSILTVQQLSSPINGIDSLKASDEPIGFQVGSFAEHYLIEDIGISKSRLVPLGSPEEYANALQRGPKNGGVAAIVDERPYVEIFLSTQCTFRIVGQEFTRSGWGFAFPRDSPLAVDMSTAILQLSETGDLQRIHDKWMTQSTCSLDNTEIDSDRLQLKSFWGLFLICGIACFIALVLHFLQIMFQLWRSAPSEPASNASTISGHFQRFLSLIDEKENSSRSGRRKRNGEERSLEDQLGRQSKRIQTETSAAFNSNN* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1730 930 MobiDBLite consensus disorder prediction 889 930 - -
Apr5g1730 930 PIRSF IGluLR_plant 7 930 IPR017103 -
Apr5g1730 930 SUPERFAMILY Periplasmic binding protein-like II 448 815 - -
Apr5g1730 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 50 66 - -
Apr5g1730 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 110 138 - -
Apr5g1730 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 323 335 - -
Apr5g1730 930 Pfam Bacterial extracellular solute-binding proteins, family 3 485 813 IPR001638 -
Apr5g1730 930 SUPERFAMILY Periplasmic binding protein-like I 32 464 IPR028082 -
Apr5g1730 930 CDD GluR_Plant 470 811 - -
Apr5g1730 930 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 25 923 - -
Apr5g1730 930 MobiDBLite consensus disorder prediction 916 930 - -
Apr5g1730 930 Pfam Ligand-gated ion channel 814 845 IPR001320 GO:0015276|GO:0016020
Apr5g1730 930 Gene3D - 55 400 - -
Apr5g1730 930 PANTHER GLUTAMATE RECEPTOR 3.3 25 923 - -
Apr5g1730 930 PRINTS Metabotropic glutamate GPCR signature 105 131 IPR000337 GO:0004930|GO:0007186|GO:0016021
Apr5g1730 930 PRINTS Metabotropic glutamate GPCR signature 137 156 IPR000337 GO:0004930|GO:0007186|GO:0016021
Apr5g1730 930 PRINTS Metabotropic glutamate GPCR signature 156 172 IPR000337 GO:0004930|GO:0007186|GO:0016021
Apr5g1730 930 PRINTS Metabotropic glutamate GPCR signature 172 189 IPR000337 GO:0004930|GO:0007186|GO:0016021
Apr5g1730 930 Gene3D - 582 711 - -
Apr5g1730 930 Gene3D - 152 425 - -
Apr5g1730 930 Pfam Receptor family ligand binding region 55 410 IPR001828 -
Apr5g1730 930 Gene3D - 467 581 - -
Apr5g1730 930 CDD PBP1_GABAb_receptor_plant 38 426 IPR044440 -
Apr5g1730 930 MobiDBLite consensus disorder prediction 889 915 - -
Apr5g1730 930 Gene3D - 760 819 - -
Apr5g1730 930 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1730 Apr-Chr5 20795852 20800634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1730 31 930 Ion Channels AT1G42540 65.098 0.0 1257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1730 K05387 - gmx:102661260 1603.57