Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1701 ATGGCCTTCGCCACCAGCGCGTTGCTTTCTTCAAACTTCCTTGGAAGGAAGGTTCTAGTATCTCCTCCAACCCCCAAAACAACCAAATTTTCCACTCCGTTACCATTCTTTTTCAAGAGAACCATTTTAAACGCTCAGAAACCTAATAATGATTCAGAACAACTCAATTCCACATCTTCACAAGCGGCTATTGCTGCTCTTATATTTTCCTCCGTGAGTATGAGTGCGAACCCTCAAGCCCTAGCTGCTGATAACATTACCCCTCCACCTGTAATCGAAGCTCAACCGAACCAACTAAACCCTTCTAATTCTAATTCATCCCCTTTCTCTCAGAACCTTCTCCTCACGGCACCAAAGCCCCAATCTCAGGTCGCTTCTGACCTACCCGAAGGTACACAATGGCGTTACAGCGAGTTTTTGAATGCCGTGAAGAAGGGCAAGGTAGAGAGAGTCAGGTTCAGCAAAGACGGTTCTGCCCTTCAACTCACCGCCGTCGATGGCCGCCGAGCCACCGTCATCGTTCCCAACGACCCTGACCTTATTGACATTCTAGCCATGAACGGCGTCGACATATCCGTCGCCGAAGCGGAAGCGAATAATGGTTTGTTTAATATCATCGGCAACTTATTGTTCCCGTTCCTTGCATTCACGGGCCTGTTTTTACTCTTCCGGCGAGCCCAAGGCGGGCCGGGCGGGCCAGGTGGGCTTGGTGGACCCATGGATTTCGGGCGGAGTAAGTCCAAATTCCAAGAAGTACCGGAGACCGGGGTGACATTCGCTGACGTGGCGGGTGCGGACCAAGCGAAGCTGGAACTGCAAGAGGTGGTTGATTTCCTGAAGAACCCTGATAAGTACACTGCGCTTGGCGCGAAGATTCCAAAAGGGTGTCTTCTGGTGGGGCCACCGGGAACCGGGAAGACCCTTTTGGCGAGGGCAGTGGCGGGGGAAGCTGGCGTGCCGTTCTTTTCGTGTGCAGCTTCGGAATTCGTGGAGTTGTTTGTGGGGGTTGGTGCGTCGAGGGTGAGGGATTTGTTTGAGAAGGCGAAGTCGAAGGCTCCTTGCATTGTTTTCATTGATGAAATTGATGCGGTTGGGAGGCAGAGAGGTGCTGGACTCGGTGGTGGGAATGATGAGAGGGAACAGACTATTAACCAGCTTTTGACGGAGATGGATGGCTTTTCCGGTAATTCCGGTGTCATTGTTTTGGCTGCCACTAACAGACCCGACGTTCTTGATTCTGCATTGCTAAGGCCTGGTCGATTCGATAGGCAAGTTACCGTGGATAGACCCGATGTTGCGGGCAGAGTTAAAATCCTTCAGGTGCATTCTAGAGGAAAAGCACTTGCAAAGGATGTTGACTTTGAAAAAATTGCTAGGAGAACTCCTGGATTTACAGGGGCTGATCTGCAGAATCTGATGAATGAAGCAGCTATTCTTGCGGCCAGGCGTGACCTAAAGGAAATTAGCAAAGATGAGATATCTGATGCTCTTGAAAGGATCATTGCTGGACCCGAAAAGAAAAATGCTGTGGTGTCAGATGAGAAGAAGAAATTGGTAGCCTATCATGAGGCTGGCCATGCTCTAGTAGGTGCATTAATGCCTGAATATGACCCTGTAGCCAAGATATCAATTATACCTCGTGGCCAAGCTGGTGGTCTCACATTTTTTGCTCCCAGCGAAGAGAGGCTTGAGTCTGGATTGTACAGTAGAAGCTACTTGGAAAATCAGATGGCAGTTGCTCTGGGCGGAAGGGTCGCTGAAGAGGTTATTTTTGGCCGGGAAAATGTCACTACTGGAGCGTCAAATGACTTTATGCAAGTTTCACGAGTGGCGAGGCAGATGGTTGAGAGATTTGGGTTCAGCAGAAAAATTGGACAAGTTGCCATTGGAGGACCTGGTGGAAATCCATTTTTGGGTCAACAGATGTCAACGCAAAAGGATTACTCTATGGCAACTGCCGACGTAGTGGATGCGGAAGTAAGGGAACTGGTAGAGAGAGCATATTCTAGAGCAACGCAAATTATCACAACTCACATCGACATCCTTCACAAGCTTGCTCAACTTCTCATAGAAAAAGAAACTGTGGATGGTGAAGAGTTCATGAGTCTATTCATAGATGGAAAGGCTGAATTATATGTAGCGTAA 2145 0.4886 MAFATSALLSSNFLGRKVLVSPPTPKTTKFSTPLPFFFKRTILNAQKPNNDSEQLNSTSSQAAIAALIFSSVSMSANPQALAADNITPPPVIEAQPNQLNPSNSNSSPFSQNLLLTAPKPQSQVASDLPEGTQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRATVIVPNDPDLIDILAMNGVDISVAEAEANNGLFNIIGNLLFPFLAFTGLFLLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGRENVTTGASNDFMQVSRVARQMVERFGFSRKIGQVAIGGPGGNPFLGQQMSTQKDYSMATADVVDAEVRELVERAYSRATQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYVA* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1701 714 SMART AAA_5 292 431 IPR003593 -
Apr5g1701 714 ProSitePatterns AAA-protein family signature. 399 417 IPR003960 GO:0005524|GO:0016887
Apr5g1701 714 Gene3D - 247 429 IPR027417 -
Apr5g1701 714 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED 56 706 - -
Apr5g1701 714 Gene3D Peptidase M41 506 709 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Apr5g1701 714 PANTHER METALLOPROTEASE M41 FTSH 56 706 - -
Apr5g1701 714 SUPERFAMILY FtsH protease domain-like 510 704 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Apr5g1701 714 Gene3D - 430 505 - -
Apr5g1701 714 CDD AAA 263 428 - -
Apr5g1701 714 MobiDBLite consensus disorder prediction 91 112 - -
Apr5g1701 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 500 IPR027417 -
Apr5g1701 714 Pfam AAA+ lid domain 451 494 IPR041569 -
Apr5g1701 714 MobiDBLite consensus disorder prediction 86 112 - -
Apr5g1701 714 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 17 714 IPR005936 GO:0004176|GO:0004222|GO:0016020
Apr5g1701 714 Pfam ATPase family associated with various cellular activities (AAA) 297 428 IPR003959 GO:0005524|GO:0016887
Apr5g1701 714 Pfam Peptidase family M41 510 703 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Apr5g1701 714 Gene3D - 129 201 - -
Apr5g1701 714 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 203 703 IPR005936 GO:0004176|GO:0004222|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1701 Apr-Chr5 20547708 20550708 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0698 9 11644378 11646477 Apr5g1701 5 20547708 20550708 PCT