Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1626 ATGGCTGGGTTCTTCTCTCTAGGTCCACAAAACAAGGTGGAACAAGTAGAAAAAGAACACAACAGCAGCGCCAGCAATAACCTATTATTGTTCAGGAACGAAGAGATCTACAACAAGGGGTTCGAGATATGGCCGCACTCCAATCACCCACACCAGAACTTGAACAACTACCTTGCGTTTGGAGTGGGTCCTAGTCGCAGGAATTGCTCCAACGTTAACGAGGAAGAGGTGTCTTTCTGTGTGTCTGATGAATCCACGAGATTTGGATTGAGTGTGATGAGGTCTGGAGGCACAAGCGGCATGAACTGTCAAGACTGTGGGAACCAAGCCAAGAAAGACTGTGCTCATCTCAGATGCAGAACTTGCTGTAAGAGCCGAGGGTTTCTGTGCCAAACCCACGTCAAGAGCACTTGGGTCCCCGCAGCCAAACGCCGTGAACGACAGCAACATCTCGCTGCGTTGCAGCACCACCAACAACAACAATTCCGCGGAGACAATAATCCTAAACGACATAGAGACACTCAACTAGCTTGCGCTCCGCCACCCATCACTCCCACAGGGTTGGAGCTAGGACAATTCCCACCGGAAGTGAGCACTTCGGCGGTGTTTCGGTGTGTGAGAGTGAGCGCAGTGGACACTTCAGATGAACAGTGCGCGTATCAAACCGCTGTAAACATCGGAGGGCATGTTTTCAAGGGAATTCTCTACGATCAAGGACCGGAAAGTTCTTACACCAGTGCACCAGGTGAGGGTTCTTCCAGTGGAGCTGAACCACAACAACTTGGTCTCATAACCGCTGCAACCACAACCACACCCAGTGGGAACCCTTTTGACCCTTCACTTTACCCCGCCCAGCTTAATGCTTTCATGGCTGGTACGCAATTCTTCCAACCCCCAAGATCCTGA 906 0.5099 MAGFFSLGPQNKVEQVEKEHNSSASNNLLLFRNEEIYNKGFEIWPHSNHPHQNLNNYLAFGVGPSRRNCSNVNEEEVSFCVSDESTRFGLSVMRSGGTSGMNCQDCGNQAKKDCAHLRCRTCCKSRGFLCQTHVKSTWVPAAKRRERQQHLAALQHHQQQQFRGDNNPKRHRDTQLACAPPPITPTGLELGQFPPEVSTSAVFRCVRVSAVDTSDEQCAYQTAVNIGGHVFKGILYDQGPESSYTSAPGEGSSSGAEPQQLGLITAATTTTPSGNPFDPSLYPAQLNAFMAGTQFFQPPRS* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1626 301 Pfam Domain of unknown function (DUF702) 100 241 - -
Apr5g1626 301 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 299 IPR007818 GO:0003700|GO:0006355
Apr5g1626 301 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 102 144 IPR006510 -
Apr5g1626 301 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 299 - -
Apr5g1626 301 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 192 240 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1626 Apr-Chr5 19904891 19906321 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Apr5g1626 DUF702 1.3e-63 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1626 5 19904891 19906321 Apr5g1796 5 21264705 21265657 ECH
Apr5g1626 5 19904891 19906321 Apr5g1626 5 19904891 19906321 ECH